Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 2e-15 >seq2 Length=712559 Score = 98.7 bits (108), Expect = 2e-15 Identities = 170/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| ||||| ||||| ||| || |||| || ||| | || | |||||| | Sbjct 517414 GACCGCACCGGAACGGGAACCCAATCCGTTTTTGGCAGACAGCTCCGATATGACCTATCC 517355 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 ||||||||||||| || || ||||| | || ||| ||| |||| || || || Sbjct 517354 GAAGGGTTCCCGCTTGTAACAACCAAGCGAATCCATCTGAAATCAGTCATTCATGAGTTG 517295 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 || ||||| ||| ||| || || || || |||||||| || || || | ||| Sbjct 517294 TTATGGTTTTTGAGCGGGGATACGAATATATCCTATCTGAAGGAAAATGGTGTGAAGATC 517235 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGT 196310 |||||||| ||||| || ||| |||| ||| | || || || ||||| || |||||| Sbjct 517234 TGGGATGATTGGGCTGACGAAAATGGTGATTTGGGTCCGGTATACGGATCTCAATGGCGT 517175 Query 196311 GCATGGG 196317 | |||| Sbjct 517174 ACTTGGG 517168 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 196862 GGGTGATTTCGTCTGGACGGGCGGCGAT--ACCCATCTGTACTCTAACCATCTGGAACAG 196919 ||| || ||| ||||| | || || ||| || ||||| |||| |||||| ||||||| Sbjct 516884 GGGAGAGTTCATCTGGTCCGGTGGGGATGTACACATCT--ACTCAAACCATGTGGAACAA 516827 Query 196920 GCCACGTTGCAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAA 196979 | | ||| | |||| ||| | | |||||||||| || ||||| ||||| Sbjct 516826 GTGAAAACCCAGTTGGAGCGTGAACCATACGCATTGCCTAAGCTGGTCATCAAGCGTAAG 516767 Query 196980 CCGGATTCCATTTTCGACTATAAGTTCGAAGATTTTGA 197017 |||||||||||||| || |||| ||| ||||||||||| Sbjct 516766 CCGGATTCCATTTTTGATTATACGTTTGAAGATTTTGA 516729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770263369520320