Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq2 147 8e-31 seq366 89.7 2e-13 >seq2 Length=712559 Score = 147 bits (162), Expect = 8e-31 Identities = 444/674 (66%), Gaps = 24/674 (4%) Strand=Plus/Minus Query 51724 TGCATAATGGTGTCGAGAAGGGGGATCGGACGGGTGTAGGTACTCGATCGGTTTTCGGCG 51783 || |||| || || | ||||| || || || || || || | ||| ||||| ||| Sbjct 517437 TGGATAACGGCGTGCATAAGGGAGACCGCACCGGAACGGGAACCCAATCCGTTTTTGGCA 517378 Query 51784 CTCAACTTAGGTATGACCTGAGTAAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATT 51843 || || | |||||||| | || |||||||| | || |||||| | ||| Sbjct 517377 GACAGCTCCGATATGACCTATCCGAAGGGTTCCCGCTTGTAACAACCAAGCGAATCCATC 517318 Query 51844 TCCCATCAGTGGTCGGGGAGTTGCTGTGGTTGCTTT---CGGGCTCTACGAACGTCAACG 51900 | |||||| | |||||| | ||||| ||| |||| |||||| | | Sbjct 517317 TGAAATCAGTCATTCATGAGTTGTTATGGTT--TTTGAGCGGGGA-TACGAATATATCCT 517261 Query 51901 ATCTCCATAAGTACGGCGTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGG 51960 |||| | | | || || | || ||||| || ||||| || ||||||||| | ||| Sbjct 517260 ATCTGAAGGAAAATGGTGTGAAGATCTGGGATGATTGGGCTGACGAAAATGGTGATTTGG 517201 Query 51961 GTCCTGTGTATGGTAAGCAGTGGCGTAGTTGGGATGCTGGTGGCGGCAAGGTCATCGATC 52020 |||| || || || || ||||||| |||||| || || || || |||| Sbjct 517200 GTCCGGTATACGGATCTCAATGGCGTACTTGGGAAGCACCCAATGGAGAGAAAATTGATC 517141 Query 52021 AGATCCATGAAGTCGTCA---AATCAATTAAGAACGATCCTGATAGTCGACGGCACATTG 52077 |||| || || || | | |||||||| ||| |||| ||| ||||| ||| | | Sbjct 517140 AGAT---TGCAGCTGTTATTGATTCAATTAAAAACAATCCGGATTCACGACGTCACCTCG 517084 Query 52078 TCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTAT 52137 | ||| |||||||||| || | | | ||| || | || |||||| | Sbjct 517083 TTAGTGCCTGGAATGTGGCGGAGATTAACAACATGAAACTGCCCCCTTGCCATTTCGCGT 517024 Query 52138 TCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTG-TATCA--GCGGTCTGCCG 52194 | || || || || ||||| ||||| || || || | || | || ||| || | | Sbjct 517023 TTCAGTTTTACGTGGCTGAGGGTAAACTATCATG---TATGCTCACAATGCGTTCCGTGG 516967 Query 52195 ACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCTGATTG 52254 | | |||| |||| | || |||||||||||||||||| | |||||||| ||| |||||| Sbjct 516966 ATACGTTCCTGGGGCTGCCATTTAACATTGCCAGCTATGCATTGCTGACACATATGATTG 516907 Query 52255 CTCGAGCAGT-TGGCCTTGATGTTGGTGAATTCATTTGGACTGGTGGCGACGTCCATATC 52313 | | |||||| || ||||| || || || ||||| ||| | ||||| || || || ||| Sbjct 516906 C-CCAGCAGTGTGATCTTGAAGTGGGAGAGTTCATCTGGTCCGGTGGGGATGTACACATC 516848 Query 52314 TACAACAACCATGTAGATCAGGTTAGGGAACAGTGTAGTCGCGTG--CCATATCCGTTCC 52371 ||| |||||||| || || || | ||| || | ||||| ||||| | || | Sbjct 516847 TACTCAAACCATGTGGAACAAGT--GAAAACCCAGTTGGAGCGTGAACCATACGCATTGC 516790 Query 52372 CTGAGGTAGTCATC 52385 || || | |||||| Sbjct 516789 CTAAGCTGGTCATC 516776 >seq366 Length=43169 Score = 89.7 bits (98), Expect = 2e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 52080 TCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTC 52139 ||||| ||||| | |||| || | || ||||| || | || ||||| | | | | Sbjct 16806 TCTGCGTGGAACCCTGCTGATCTGAACGAGATGGCACTGCCACCGTGCCACATGTTCTGC 16865 Query 52140 CAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATG 52199 |||||||| || || || || || | ||||| || |||| ||||| || ||||||||| Sbjct 16866 CAATTCTACGTGGCGGACGGGGAGTTGTCGTGTCAGATGTACCAGCGCTCGGCCGACATG 16925 Query 52200 T-TCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCT 52249 |||||| || |||||||||||||| ||||| | |||| |||| ||| Sbjct 16926 GGTCTTGGT-GTGCCGTTTAACATTGCAAGCTACGCGCTGCTTACGCGTCT 16975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190085724360720