Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_031245.1 Length=221908 Score E Sequences producing significant alignments: (Bits) Value seq2 340 3e-88 seq13 105 9e-18 >seq2 Length=712559 Score = 340 bits (376), Expect = 3e-88 Identities = 524/740 (71%), Gaps = 22/740 (3%) Strand=Plus/Minus Query 48696 AATGCCAGCACCAATAGTTTCTTGGTACACAGCAGATAATACTTCACAGGTAACTCAATG 48755 ||||||||||||||||||||||||||| ||| | ||||| |||| || |||||||| || Sbjct 607947 AATGCCAGCACCAATAGTTTCTTGGTATACATCCGATAACTCTTCGCAAGTAACTCAGTG 607888 Query 48756 GGATATCGGTACGGTAGATGCTGGATCCATTTCTAACACTTTCACAGTACTTATCTGGAA 48815 |||||||||||| || || || || || | || | || || || ||||| || ||||| Sbjct 607887 GGATATCGGTACAGTTGACGCAGGTTCGTTGTCCACTACCTTTACGGTACTGATATGGAA 607828 Query 48816 CAACCGTGGTAATGCTACAGCTGTTTCTGATATGACTAACTGTTCAATTACCACTAAGGA 48875 |||||||| | | ||||| || || || ||| ||||| || |||| |||||||| Sbjct 607827 TAACCGTGGCGGTTCGACAGCAGTCTCCGACATGCAGAACTGCACACTTACAACTAAGGA 607768 Query 48876 TAATGCTGGTGGTAACACTGGTGAATTGGTTACTAACACTTGGATCGAGGTAAAAGTTGA 48935 || | | || |||||||| || ||| | || || || |||||||| ||||| |||||||| Sbjct 607767 TAGTTCGGGCGGTAACACAGGCGAACTTGTAACAAATACTTGGATTGAGGTTAAAGTTGA 607708 Query 48936 CTCCTTAGGAGAAACTGGATTCTCAGCAATCGGTGGTACAGTAACTCATGATATCAGAGC 48995 ||| || ||| | || | || | ||||| || || || | |||||| | || Sbjct 607707 CTCGCTATCCGAATCCTCGTTTACGGCTGTAGGTGGGACGGTTACGAAAGATATCCGTGC 607648 Query 48996 TCAAAAGGCTGATGCTCCTGCTAAGACAATTAAAGGTACTGC-AAACACTG----GTCAA 49050 | ||| | || ||||||| || ||||| ||||| | || || || | || || Sbjct 607647 TACGAAGTCCGACACTCCTGCGAAAACAATCAAAGGGCCAGCTAATGACGGTAACGTTAA 607588 Query 49051 TTGA-CTGACGAA---GATAACTTCTCTAAATTGACTCTACGTGCTAACGTACCTCCAAC 49106 | | || || | | |||||||| || | ||||| ||||| |||||||| ||||| Sbjct 607587 TACAGCTAACACAACCGCAAACTTCTCGAAGGTTACTCTTCGTGCAAACGTACCACCAAC 607528 Query 49107 TGCTACAGCAGGTTTAGTTAACTTCTTGACTCGTGTATCTTATCAGTACGTTTAATACAA 49166 |||||||||||||| || | |||||||| ||||| || || |||||||| ||| | Sbjct 607527 GGCTACAGCAGGTTTGGTAACATTCTTGACACGTGTGTCCTACCAGTACGTGTAAGA--- 607471 Query 49167 ATATTTCAC-TCAATACAATGAGGGAGGAA---TCATAATGGAGTCTGTGTTCAGTAAGA 49222 | || || |||||||||||| ||||||| || ||| || | |||| | || Sbjct 607470 --AATTGACTTCAATACAATGAAGGAGGAAATTGTATCATGCTTTCGATTTTCAATGAGC 607413 Query 49223 TAAATGGAATGTCTCCTGTAGCACAAGACTTTATTTGGTTGGGTGAGTATCTTGATGGTA 49282 || || | |||||||||| |||||||||||| ||| |||||||||| ||| |||| Sbjct 607412 ACAACGGGGTCTCTCCTGTAGGACAAGACTTTATATGGGTGGGTGAGTACGATGACGGTA 607353 Query 49283 CTCACCTTTCTGAATTTGGTCTTG--AAACTAAGGAGGAAAATAGTTTTTATGACATTCA 49340 || |||| || |||||| ||| | ||||| | || || || || || || ||||| Sbjct 607352 CTTACCTATCCGAATTTAACTTTGACACACTAA--AAGAGAACAGCTTCTACGATATTCA 607295 Query 49341 GAGAGATAAATTACTAAGGTTCGGATTAATCGGTCATGGATTAAAGTTATATTTTGAGGT 49400 | || | | | | || || | || ||||| || ||||| | || ||| Sbjct 607294 ACGGGACAGGCTGGTTCGATTTGGTGTCATGGGTCACGGTAGCAAGTTTTTCTTCGAGAG 607235 Query 49401 TGATGGAGTATTCAATCTTG 49420 ||| || |||||||| |||| Sbjct 607234 TGACGGGGTATTCAACCTTG 607215 Score = 134 bits (148), Expect = 2e-26 Identities = 273/399 (68%), Gaps = 10/399 (3%) Strand=Plus/Minus Query 55942 CGTGAAATTACCTTCATAGGTGTTGAGTCAGGGCTTATCTTCTGTGACGCTACCGAGTCC 56001 || || ||||||||||| || || | |||||| | | |||||||| || | ||||| Sbjct 599872 CGGGACATTACCTTCATGGGCGTGTACTCAGGGTTGTTGTTCTGTGATGCGGCAGAGTCG 599813 Query 56002 TTTTACTCTACGGATTTCGGGGAGATACTCAAGTATCTCGACTTCGGTACTATTATAGCA 56061 || || || || ||||| || | || ||||| || ||||||||||| || | ||| Sbjct 599812 TTCTATTCAGACGACTTCGGAGATGTGCTAAAGTACCTTGACTTCGGTACAATGGTGGCA 599753 Query 56062 GGGCAGACTACAAGTGCTGAACGTGTATGGGTAAAGAACACACTAGGTTATCCAGTTACT 56121 |||||||| ||| || || | || | || |||||||| || || || || || Sbjct 599752 GGGCAGACGACAGCGGCAGAGAGGGTGTACGTCAAGAACACCCTTGGATACCCCGTAGAG 599693 Query 56122 AACGTTAGACTTAATCTCGATCAAAGAGAACTGGATGGAGTGGATGCTAAAGCTGAGATG 56181 ||||| || | | || ||||||||||| ||||| || | || || ||||| | Sbjct 599692 AACGTCAGGTTGTGGGTTGACCAAAGAGAACTTGATGGGGTCAACGCCAAGGCTGAAGTA 599633 Query 56182 TCTCAGTTAGATGCACCATTTGTGCCTAGTCAGGA-CTTG---ATGTATGATGGAGATTT 56237 | || | || || || |||| ||| ||| | |||| ||||| || | || | Sbjct 599632 AGTAAGCTGGACGCTCCCTTTGAGCCACGTCCTCAGCTTGTCTATGTA-GA-GCAGTTAG 599575 Query 56238 ACCTC-ATGGAGAGAAGATTAGTTTCTACGTCAGAGTAGCTACTACTCGTCAAGCTCGTT 56296 ||| | ||| | |||||||| ||||| || | ||||||||| ||||||||| | Sbjct 599574 ACCACAATGCA---AAGATTAGCTTCTATGTTCGTATAGCTACTAATCGTCAAGCAATCT 599518 Query 56297 CAGGAGGTATGTTCGATATTTACGTGACAGCTGACCCAG 56335 || || ||||||||||| || | ||||||||||| Sbjct 599517 GGGGCGGGATGTTCGATATCCTAGTCAAAGCTGACCCAG 599479 >seq13 Length=206566 Score = 105 bits (116), Expect = 9e-18 Identities = 181/259 (70%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 21324 TTCAG-CTATCGATATATTCAAACGTATCATGAAGTCCCAGTTAGAAACTGGAGCTCCTT 21382 ||||| | || || || | ||||| ||||||| |||||| | ||||| || | |||| Sbjct 5034 TTCAGGCGATTGACATTATGAAACGCGTCATGAAATCCCAGCTGGAAACGGGTACGCCTT 5093 Query 21383 ATATGTTCTATCGTGATACTGTCAATAGAGCTAACCCTAATAAACATAAAGGTATGATAT 21442 | ||||| || || ||||| ||||| | | ||||| || | | || ||| ||| Sbjct 5094 ACATGTTTTACCGGGATACCGTCAACCGTTCGAACCCGAACAGTGCACACGGCATGGTAT 5153 Query 21443 ATTGCTCTAACTTATGTACTGAAATAATGCAGAACATGAAGCCG--ACTATTATCGAAAC 21500 | | || ||| | ||||| ||||| ||||||||| || | | ||| | | |||| Sbjct 5154 ACTCTTCCAACCTTTGTACCGAAATCATGCAGAACC--AATCTGCAACTGTAGTTGAAAA 5211 Query 21501 TGAAGAAATCGTAACTAGAGAAGATGGTCAAAAGCGTATCGTTACTACTAAAATCCCTGG 21560 ||||| ||||||| | ||||||| |||| || ||||| | | | ||| | || || Sbjct 5212 AGAAGAGCTCGTAACCA---AAGATGGACAAACCCGCATCGTGATTTCCAAAGTGCCGGG 5268 Query 21561 TGATTTCGTAGTATGTAAC 21579 ||||||||||| || ||| Sbjct 5269 CGATTTCGTAGTCTGCAAC 5287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709937202274560