Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq6 104 3e-17 >seq6 Length=341960 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 157417 TTTGTCTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTC 157476 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||| Sbjct 282194 TTTGTCTCAGTAGCTCAGCAGGATAGAGCAACGGCCTTCTAAGCCGTCGGTCGGGGGTTC 282253 Query 157477 GAATCCAGCCTGAGACGCCA 157496 |||||| |||| |||| || Sbjct 282254 GAATCCCTCCTGGGACGTCA 282273 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157419 TGTCTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGA 157478 |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 289637 TGTCTCAGTAGCTCAGCTGGATAGAGCAACGCCCTTCTAAGGCGTCGGTCGGGGGTTCGA 289578 Query 157479 ATCCAGCCTGAGACGCCA 157496 |||| |||| |||| || Sbjct 289577 ATCCCTCCTGGGACGTCA 289560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596273270120320