Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000336535.2_202015-10-27] 4,552 sequences; 47,709,731 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq62 178 3e-39 seq270 152 1e-31 seq752 131 4e-25 seq326 109 1e-18 seq215 109 1e-18 seq97 107 4e-18 >seq62 Length=75506 Score = 178 bits (196), Expect = 3e-39 Identities = 180/232 (78%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | ||| || || |||||||||||||| Sbjct 20313 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 20372 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 20373 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 20432 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 20433 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 20491 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||| ||||| |||||||| ||||| ||||| |||||||| ||| Sbjct 20492 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTTC 20543 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | ||| || || |||||||||||||| Sbjct 20085 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 20144 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 20145 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 20204 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 20205 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 20263 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 20264 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20311 >seq270 Length=49446 Score = 152 bits (168), Expect = 1e-31 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 17061 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 17120 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 17121 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 17180 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || || Sbjct 17181 ATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 17239 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||||||||| |||||||||||||| ||||| |||||||| || Sbjct 17240 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 17290 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 16832 ACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 16891 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 16892 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 16951 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || | Sbjct 16952 GATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCA 17010 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||||||||||| |||||||||||||| || || |||||||| Sbjct 17011 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 17059 >seq752 Length=16686 Score = 131 bits (144), Expect = 4e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || ||||||||||| || | ||||||||||| ||||| || || || ||||| |||||| Sbjct 12933 TTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 12992 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| |||||| || |||||||| ||||| || ||| || || | || Sbjct 12993 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 13051 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 13052 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 13111 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 13112 GATCTGCAT 13120 >seq326 Length=69913 Score = 109 bits (120), Expect = 1e-18 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | |||||| || || || ||||||||||| | Sbjct 34920 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGA 34979 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| || || || ||||| ||||||| ||| || |||||| Sbjct 34980 AAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCA 35034 Score = 86.0 bits (94), Expect = 1e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| ||||| || ||| || || | || || ||||||| | || || Sbjct 35105 TACCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTCAATGCTGTCCGACGGCTCCACG 35163 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 35164 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTTTC 35214 >seq215 Length=35674 Score = 109 bits (120), Expect = 1e-18 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||||||||| || || | |||||| |||||||| ||| ||| Sbjct 20964 GGGAAGCCCTCGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCG 21023 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||||||||| ||||| || || | || ||||| || |||| ||||||||| Sbjct 21024 TTGGGGCCGCACAGACCGTAACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGC 21083 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 |||||| ||||||| || || || ||||| || || | ||||||||| Sbjct 21084 AGAATCATACCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 21131 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| || | ||| ||| || Sbjct 20106 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAGG 20165 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 ||| ||| |||||||||||||||||||| ||||| || || | |||||| || ||| Sbjct 20166 TGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTGC 20225 Query 316282 TTCCAAAC 316289 ||||| || Sbjct 20226 TTCCACAC 20233 >seq97 Length=52183 Score = 107 bits (118), Expect = 4e-18 Identities = 340/513 (66%), Gaps = 18/513 (4%) Strand=Plus/Plus Query 301402 CGATGCTTAAAGATAGCGATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACG 301461 ||| | || ||| || | || | ||| | || || || ||||| |||| ||||| || Sbjct 39596 CGAGGGTTGAAGGTAACCATTCAAAAATTTGATCCATACATCAATATCGACCCGGGAACA 39655 Query 301462 ATGAGCCCGACTCAACATGGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTG 301521 ||||| || ||| ||||| || ||||| || ||||||||||| || ||||| ||||| Sbjct 39656 ATGAGTCCTTATCAGCATGGTGAGGTGTTTGTAACGGATGATGGCGCGGAAACGGATCTT 39715 Query 301522 GATCTGGGGCACTACGAACGTTTCACT-TCATTAACC-CTTAAGCGTGAAAGTAATTTTA 301579 || || || |||||||||||||| | | ||| |||| || | | || || | | Sbjct 39716 GACCTTGGCCACTACGAACGTTTTATTGACATCAACCTCTCCA--AAAACAGCAACGTCA 39773 Query 301580 CGACTGGCCAAGTTTATTTAAAAGTTATCGAAAATGAAC-GCGAAGGTAGCTATCTCGGA 301638 ||||||| |||| || | || ||| || || | ||| || | ||||| || Sbjct 39774 CGACTGGTAAAGTATACTCCTCCGTCATCAGCAAAGAGCGGCGCGGGGA-ATATCTGGGC 39832 Query 301639 AAGACGGTGCAAGTTGTTCCCCACATCACCGATGAAATCAAA-AG-AAGAATT---CACA 301693 ||||| ||||| |||| |||||||| | || |||||| || | ||| | || Sbjct 39833 GGAACGGTACAAGTCATTCCACACATCACGAACGAGATCAAAGAGCGTGTATTCCGCGCA 39892 Query 301694 TTGCGGCTGAA---AAATCAGATATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATA 301750 || |||| || ||| | ||||| || ||||| || ||||| || || | Sbjct 39893 GGACG--TGAAGCGGGTTCGGATGTCGTTATTACGGAGATTGGCGGTACGGTGGGTGACA 39950 Query 301751 TCGAATCGCTT-CCTTTTATAGAAGCGATTCGTCAACTCTCTCATGACGAAGGAACGGCC 301809 ||| | |||| ||||| | ||||| ||||||||| || ||| | ||| | | Sbjct 39951 TCG-AGAGCTTGCCTTTCCTGGAAGCTATTCGTCAAATCAAGAGTGATGTAGGTCGTGAC 40009 Query 301810 AATGTTCTGTTCATTCATCTCGTGCTCTTACCCTATATAGCGACTGCTGGTGAGTTGAAA 301869 || || ||| ||| ||| | || | || || || | |||||||||| ||||| Sbjct 40010 AACGTCATGTACATCCATGTAACACTTATCCCTTACATCAAGGCTGCTGGTGAAGTGAAA 40069 Query 301870 TCAAAGCCAGCACAGCATTCGGTTAAAGAATTG 301902 | || ||| | ||||| || || |||||| Sbjct 40070 ACCAAACCAACTCAGCACAGTGTGAAGGAATTG 40102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046678151553008