Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000340395.2_202017-01-18] 4,878 sequences; 38,865,974 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq319 141 2e-28 seq3581 111 3e-19 >seq319 Length=29396 Score = 141 bits (156), Expect = 2e-28 Identities = 677/1060 (64%), Gaps = 57/1060 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||| | ||| ||| || Sbjct 14170 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAG 14111 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| ||| |||||||||||||| ||||| ||||| || || | |||||| || || Sbjct 14110 GTGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTG 14051 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || || | |||| || | | ||||| |||| || || | ||| Sbjct 14050 CTTCCACACCTGGCCACTCGTGGGCTCAACCTCACCCGTCAGCATTTTGATCATGGTCGA 13991 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGG-------AGTTCAGCGATACCT 319222 || || |||||||| || | ||| |||| | | || || || ||| Sbjct 13990 CTTTCCGGCACCGTTGGGTCCAAGCACGGCGATACGGCTCGACAAAGCGCA-CGTCACC- 13933 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | | | |||| || | | | || || || || |||| | || ||| Sbjct 13932 --GAAATGTTGTTGATCGACG----GCTTCGGGGTGCCAGGGTACTGGTACGA-ACAGTT 13880 Query 319282 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 ||| || ||||||| |||| |||| | ||||||| |||||||| || Sbjct 13879 CGTCAGACGAATGATGGGTTTACCCTTGTTCTTGATGTCGGCGAGGAAACCGGGCTCCGG 13820 Query 319341 GAACTTC-----CACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 319395 |||| | ||||| ||| | ||| || ||||||| | | || || Sbjct 13819 GAACGTGAACTTCACGTTGTCA--GACTCC---AGCTCGTAGTAGGCCTTGGCCTCAGGC 13765 Query 319396 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 319455 || || |||||| | || || || |||||||| |||||||||| | | ||| Sbjct 13764 TTCTGCTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGCGTC---TCG 13708 Query 319456 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 319515 || || || || ||| || |||| ||||||||| || |||||||| ||||| || | | Sbjct 13707 TAGTGAATGATGTTGGTACAGACAGTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATG 13648 Query 319516 CACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAA 319575 | || |||| | ||| | ||||||| | || ||| ||||| ||| Sbjct 13647 CTCGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCC 13588 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 319635 | |||||| |||||||| ||||| ||||| | | || ||| | ||||| ||||| ||| Sbjct 13587 AAATGGTTCGTCGGCTCATCAAGGAGCAGGATGTCAGCCTTCTGCAGCATGGCACGAGCA 13528 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 319695 || | |||||||| ||||| || || ||||| || | || ||| || Sbjct 13527 AGCTCAAGTTTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGC 13474 Query 319696 ATATCA------AAGCCAACCGATTCTAGAGTAGTTACG-ATCTTTTCACGAGACCAAAT 319748 || || ||||| || | | || || || || | || || |||| | | Sbjct 13473 ATCTCCGGGGTGAAGCCCACGCTTCCGAGCGT-GTCACACACCTCGTCGCGAGG---AGT 13418 Query 319749 GTT-TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGG 319807 ||| ||| | || | || || || |||||||| | | | | | || |||| Sbjct 13417 GTTCTTCAGGTCCTCATCCACCA--GG--ATGAAGTCCACCACGGACAACTCAGCCTCGG 13362 Query 319808 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAAC--ATCCGCAGAGGGGAACCC 319865 | | | || | ||| || ||| | |||| |||| | | | || | ||||| || Sbjct 13361 AAGCCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGGAGCGGCTG--GGGAAGCC 13304 Query 319866 TTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCC 319925 || ||||| ||||| |||||||||||||| || || ||||| ||||| || || Sbjct 13303 CTCGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCC 13244 Query 319926 ACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTT 319985 ||||||||||| |||| || || |||| | | || | ||||||||| ||||| | Sbjct 13243 GCACAGACCGTAACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGCAGAATCAT 13184 Query 319986 TCCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 ||||| || || || || ||||| || | ||||| ||| Sbjct 13183 ACCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 13144 >seq3581 Length=1496 Score = 111 bits (122), Expect = 3e-19 Identities = 606/943 (64%), Gaps = 37/943 (4%) Strand=Plus/Plus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| ||||| | | ||| ||||| | |||||||||||||||| ||| | ||||| Sbjct 395 GTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTG 454 Query 229818 GACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 ||| | ||||| | ||| ||| ||| | |||||| | ||| || | | Sbjct 455 GACGGCCGAGGAGCTGGACCTGGT-GCACGACCTGAAGGACTGGGG---GAACCTGACGG 510 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || |||| || || |||||||| ||| | |||| || ||||| | | ||| || || | Sbjct 511 ACAACGAGCGCCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATCG 570 Query 229937 TGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 229996 ||| || || ||| || ||||| || || || || || ||||| || | Sbjct 571 TGAACGAGAACCTGGCGATGAACTTCAGCAATGAGGTGCAAGTGCCGGAGGCTCGCTGCT 630 Query 229997 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCG 230056 | || | | ||| | || ||| ||||| || || || | ||||| |||| Sbjct 631 TCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCG 690 Query 230057 ACGCGCTTATTTC-----CGACGAGCAAGAACGGAACGAGCTTTTTGA-TGCCATTGAAA 230110 || || || || || || | | ||| ||| | ||| || |||||| || | Sbjct 691 ACACG--TACATCAAGGACGCCGTGGA-GAA-GGATCA--CTTGCTGCGTGCCATCGAGA 744 Query 230111 ACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAAT 230170 |||||| || | || ||||| ||||| | || ||| || ||| || | Sbjct 745 CGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTGTTT 804 Query 230171 CGTT-TGCC--GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 ||| | || |||||||| | || | | || || || ||| | || || || Sbjct 805 CGTCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTT 864 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 |||||| ||||||| ||||| ||| || | |||||||| || | | || | Sbjct 865 CCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGA 924 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCA 230346 ||||| ||||||| || |||||||| | || | |||| || || | ||||| || Sbjct 925 ACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCG-CGTGCCTCATGTACTCG 983 Query 230347 AAGCTCCAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGA 230405 ||| | ||||||||| || ||| || || | ||| | || || || | Sbjct 984 AAGTTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGT 1042 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTG 230464 | || | |||||| | | ||| | | || || | || || ||||||||| ||| Sbjct 1043 GATTGAGCACGAGTTCGTGAGCGACTCGCTCCCC-GTGGAGCTGATCGGCATGAACTCTG 1101 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT---T 230521 || ||| | ||||||||||| ||||| ||||||||| | | |||| ||| | Sbjct 1102 CGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGTGCAT 1161 Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581 | ||| | |||||| |||||||| || | | ||||| | || ||||| || | Sbjct 1162 CCAAGA---TCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGG 1218 Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TCAGAGGCCTGGTGT-GATGAA 230639 | ||||||||||||||||| ||||| || | || || || ||| ||||||| | || Sbjct 1219 GCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTACTCCAAGG-CTGGTGTGGGTGTC 1277 Query 230640 GC--CCGAAGACAATATTTTTGCTATTGACGATGATTTTTAAG 230680 || |||| ||| | | || || | |||| || ||||||| Sbjct 1278 GCGGCCGAGGACCAGGTGTTCACTCTGGACGCAGACTTTTAAG 1320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057757886661140