Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000340395.2_202017-01-18] 4,878 sequences; 38,865,974 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq866 145 5e-30 seq35 145 5e-30 seq1135 127 1e-24 seq37 96.9 2e-15 >seq866 Length=11667 Score = 145 bits (160), Expect = 5e-30 Identities = 168/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | |||||||||||| | ||| || ||||| |||||||||||| | Sbjct 223 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 164 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| || | ||||||||| |||||||| || ||||||||||| | |||| Sbjct 163 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 104 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || || ||||| | | | | ||||| || | || || || Sbjct 103 -ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 45 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCT 34385 ||||| ||||| || ||||| || | ||| ||||| ||||||| Sbjct 44 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCT 1 >seq35 Length=76463 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||||||||| || | |||||||| ||| | ||| || ||||| |||||||||||| Sbjct 56701 TCCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 56642 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 |||| || |||| |||| ||||||||| ||||| || || |||||||||||| || Sbjct 56641 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 56582 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || || ||||| | | | | || || || | | || || Sbjct 56581 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 56522 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||||||| ||||| || | || ||||| ||||||||||| Sbjct 56521 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 56474 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||| ||| | ||| || ||||| |||||||||||| | Sbjct 56472 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 56413 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| |||| ||||||||| ||||| || || |||||||||||| || Sbjct 56412 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 56353 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| || || ||||| | | | | || || || | | || ||| Sbjct 56352 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 56293 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||| ||||| || | || ||||| ||||||||||| Sbjct 56292 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 56246 >seq1135 Length=8246 Score = 127 bits (140), Expect = 1e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 4474 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4533 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| || | || |||||||| || || ||||| | || | | Sbjct 4534 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4593 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || |||| || || ||||||| ||||||||| ||||| || || || ||||||||| Sbjct 4594 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 4653 Query 34382 ATCTGCAT 34389 |||||||| Sbjct 4654 ATCTGCAT 4661 >seq37 Length=75672 Score = 96.9 bits (106), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || || ||||| ||||||||||| || Sbjct 35966 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 36025 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 36026 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 36078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323052793167680