Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000340395.2_202017-01-18] 4,878 sequences; 38,865,974 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq408 125 6e-24 >seq408 Length=24850 Score = 125 bits (138), Expect = 6e-24 Identities = 191/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 || |||||| ||||| ||||| ||||| | |||| || || | ||||||| Sbjct 7671 ACACCCGTGCTGCCGAAGCCGCCGGCGCCGCGCGCCGTGTCCTCGATCTCATCCACCTCC 7730 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | ||| || ||| || | |||| || |||||||| | ||||| || ||| Sbjct 7731 TGCACCTCTGGGTACTCGATCTTCTCGAGAATAAGCTGCGCCACGCGGTCCCCGCGCTTA 7790 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 ||| ||| || | | |||| | |||||||| | ||||||||||||||||||||||| Sbjct 7791 ACCGAGAAGTCTTCG--GCCGCATGGTTGAACAAGATCACGCCCACGTTGCCGCGGTAGT 7848 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 ||||||| ||||| || ||||| ||||||||| | ||| | || || || || || | Sbjct 7849 CGGCGTCGATCACACCGGCGCCAGTGTCGATGAATTTCTTAAGTGCGAGCCCAGAACGCG 7908 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 | ||||| || |||| || ||| |||||| Sbjct 7909 GCGCCACACGCGCGTAACATCCAGCGGGAA 7938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430028832997136