Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000340395.2_202017-01-18] 4,878 sequences; 38,865,974 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq179 271 2e-67 seq440 143 7e-29 >seq179 Length=41763 Score = 271 bits (300), Expect = 2e-67 Identities = 631/947 (67%), Gaps = 6/947 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || |||||||| ||||| || | | || || || || | ||| ||| |||| || Sbjct 20848 TTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 20789 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || || ||| ||||||| || || ||||| || | ||||| || ||| | Sbjct 20788 TGTTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAG 20729 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || ||||| | || ||||| | || || Sbjct 20728 TGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGCATGCACAACATCCGCGCC 20669 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||||| ||||| |||||||| |||| || || ||| | | |||||||| | Sbjct 20668 ACGAACAGCTACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGG 20609 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || | | || || | || || |||||||| ||||| ||||||||||| |||| Sbjct 20608 GTCTTCAATGACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTC 20549 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || ||||| || ||||| | || ||||| || ||||| || || ||| Sbjct 20548 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAAC 20489 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || || ||||| || || ||||| | || | Sbjct 20488 CACGGCAACGAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTG 20429 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTC 364024 || |||||||| ||||| || | | | || ||| || || ||||| | || | Sbjct 20428 TTCATGAAGCGTGTGGAAGC--GAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCC 20371 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 | || || | ||| ||||| ||||| | | |||| ||||| ||||| || || Sbjct 20370 CCGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGG 20311 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 |||| || || ||||| || || ||| |||| ||||| |||||| |||| ||| Sbjct 20310 AGGGGCGCGCGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGC 20251 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 |||||||||| || || | ||| ||||||| || || |||||||||||| |||| Sbjct 20250 AGATTGAGACGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACC 20191 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 ||||| |||| || || || | ||||||| | || ||||||||| || ||||| Sbjct 20190 AGCAGAACCTCGGCACGATCCGCTCGAGCAACTTGTGCTGCGAGATTATGGAGTACACGT 20131 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAG 364324 | ||||| ||| || || || ||||| ||||| | || || || |||||| | | Sbjct 20130 CGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGG 20071 Query 364325 ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCG 364384 |||| || || ||||| | || || || || ||| | | || | || | Sbjct 20070 ATGGAGTGTTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGA 20011 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGT 364443 ||||||| || ||| || || || || | | || || || || || ||||| Sbjct 20010 ACAAGGTCATTGACGTCAACTACTA-CCCCGTGGAGGAGGCGCGCAAGTCCAACATGCGC 19952 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 || |||||| ||||| |||| || ||||| ||||| || | ||||| Sbjct 19951 CACCGCCCGGTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTAT 19905 >seq440 Length=23305 Score = 143 bits (158), Expect = 7e-29 Identities = 317/470 (67%), Gaps = 4/470 (1%) Strand=Plus/Plus Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 ||||| ||||| |||||||| || ||||| || || |||||||| ||||| || || Sbjct 1498 CGAAGTGGGTGACCTCGGACCTGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAGGTA 1557 Query 111542 CAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAA-TTACAGAATGTCATTG 111600 || |||||||| || | |||||| || || || | || || ||| Sbjct 1558 CACGGACATGCACGCGGACTACACTGGACAGGGCGTGGACCAGCTTGCTGAG-GTGATTC 1616 Query 111601 ATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAAT 111659 | ||| | | || ||||| || || || || | || ||| |||||||| | Sbjct 1617 A-CAAGCTGCGTACGAACCCGACGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGCT 1675 Query 111660 GCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGAC 111719 | || | | |||||||| ||||| || || | | ||||| || || || ||| Sbjct 1676 GATCTGAACGAGATGGCACTGCCACCGTGCCACATGTTCTGCCAATTCTACGTGGCGGAC 1735 Query 111720 GGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTT 111779 ||| | | || || || ||||| ||||| || || || || ||||||||||| |||||| Sbjct 1736 GGGGAGTTGTCGTGTCAGATGTACCAGCGCTCGGCCGACATGGGTCTTGGTGTGCCGTTT 1795 Query 111780 AATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCG 111839 || |||||||| ||||| || ||||| | || | || || | || | ||||| Sbjct 1796 AACATTGCAAGCTACGCGCTGCTTACGCGTCTAGTGGCACAAGTGGCAGGGTTGAAACCT 1855 Query 111840 GGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTT 111899 |||||||| |||||||||||||| || |||||||| || |||||| |||| | ||| Sbjct 1856 GGTGAATTTATTCACGTTATCGGCGACGCGCATGTGTATCTGAACCACGTTGAGCCTCTT 1915 Query 111900 AAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATTCATATCAA 111949 ||| ||| | | ||| ||| ||||||||| |||| || || Sbjct 1916 CAAAAGCAGCTTACGCGTTCACCGCGGCCATTCCCAACGCTTCACATTAA 1965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303272141214596