Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000340395.2_202017-01-18] 4,878 sequences; 38,865,974 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq179 241 1e-58 seq35 150 2e-31 seq866 118 1e-21 seq1135 104 2e-17 seq37 96.9 3e-15 >seq179 Length=41763 Score = 241 bits (266), Expect = 1e-58 Identities = 951/1469 (65%), Gaps = 38/1469 (3%) Strand=Plus/Plus Query 145030 CTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACG 145089 || ||||| || | || | ||||| || |||| | ||||| || |||| ||| || Sbjct 19499 CTCGATCAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCG 19558 Query 145090 ACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGC 145149 || |||| ||| |||||| | || || | ||||| || ||||||| || ||||| Sbjct 19559 GCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGC 19618 Query 145150 GGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGAT 145209 |||| || |||||||| ||||| | | || ||||| | ||||||||| | | Sbjct 19619 CGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCAC 19678 Query 145210 GTCTTCCTTTAGCGTACCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTC 145266 || ||||| |||| | |||||||||| | ||||| ||| | ||| |||||||||| Sbjct 19679 GTTCTCCTTGAGCGCAGCCCAATCCCACAAGCCCGAAGACGGGGTGACGCCCCACATGTC 19738 Query 145267 GTACTGCAAAATGCCCTCGCTGGC-GGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAG 145325 | |||| || || |||| |||||| || | | ||| ||| | || || | |||| Sbjct 19739 GAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACG--TCTCGTACGGGCCCAGC 19796 Query 145326 T-TTTGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTG 145383 | ||||||| ||| || | | ||||| || || | || || |||||| || | Sbjct 19797 TCCTTGGCGATCTC-CATCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 19855 Query 145384 CCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCAT-GCGCAGCAGTACAAAAGCAT 145442 | ||||||| |||| ||||||| || |||| | || || | ||| |||| Sbjct 19856 CATGTTGAGTTCACGGGCTTGCGGGCTCTCGAAC-GCATAGTTCATGAGGATAAATGCAT 19914 Query 145443 CGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCG 145502 | ||||| ||||| | || | || | || || || ||||||| | | | |||| Sbjct 19915 CCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCT 19974 Query 145503 ACTCGATAGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTT 145561 ||| | || || | | | || ||| || | || |||||||| || || ||||| Sbjct 19975 CCTCCACGGGGTAGTAGTTGAC-GTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTG 20033 Query 145562 GTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTG 145621 || | | || ||| | ||| ||| ||| || | ||||| | | | Sbjct 20034 GTCACCTCGTACAGCTTCTGGTAGTTGAAC----ACTC--CATCCTCCACAAACTTGGGG 20087 Query 145622 ACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGAT 145680 | ||| | ||||||| || || || ||| ||| || |||| || |||| | | || Sbjct 20088 AGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAAT 20146 Query 145681 CTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT 145740 |||| |||||| ||||| | ||| || || || || ||||| || || | ||| Sbjct 20147 CTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTT 20206 Query 145741 GCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--A 145798 | |||||||||||| |||||| |||| |||| ||||| | ||||| |||| ||| Sbjct 20207 GGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGC 20266 Query 145799 AAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTC 145858 ||| || | ||| ||| | | || | ||| ||||| | ||||| ||| Sbjct 20267 GAAC--CACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTC 20324 Query 145859 CTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGA 145918 ||| || ||| ||| || || |||| ||| | || ||||| || ||||| Sbjct 20325 TCGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGG 20384 Query 145919 CACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCAC 145978 || | || ||| |||||| || | || |||| ||| |||| ||| || |||||| Sbjct 20385 CAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCAC 20444 Query 145979 AGCGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAA 146034 || ||||| | | || ||||||| |||| ||| | || || ||| || || Sbjct 20445 AGAGCGTAGAAGAGGTCGCGCGCGCGGTGCA--GCTC-GTTGCCGTGGTTCTTGC-GCAG 20500 Query 146035 ATTAAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTT 146093 | || | ||| | | ||| ||||||||||| || | |||| ||||| | |||| Sbjct 20501 CTCCAGGA-ACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTT 20559 Query 146094 TTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGG 146150 | || ||| || ||||||||||| | || || ||| || ||||| | || ||||| Sbjct 20560 TGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGG 20619 Query 146151 GCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGC 146210 | || ||| ||| | |||||||| | || | || || ||| | | Sbjct 20620 GGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGT 20679 Query 146211 AATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCG 146270 || | | | ||| | ||| ||| | ||||||| || ||||| | ||||| Sbjct 20680 TGTGCATGCTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCG 20739 Query 146271 TCTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCT 146330 | ||||| ||||| ||||| ||| | ||| | ||||| || ||||| ||| || Sbjct 20740 TGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCT 20799 Query 146331 GCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGC 146390 ||| |||||| || || || | ||| || ||||||||||||| | | | Sbjct 20800 GCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTG 20859 Query 146391 TCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGA 146450 ||| | | |||||| | | || | || ||||| | ||||| |||| || | Sbjct 20860 ACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCA 20919 Query 146451 CGCGCATGAGCATGTGTTGGGGCCGCTCC 146479 ||||||||| ||| || ||||| |||||| Sbjct 20920 CGCGCATGATCATCTGCTGGGGGCGCTCC 20948 >seq35 Length=76463 Score = 150 bits (166), Expect = 2e-31 Identities = 179/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| || || | || |||||||| || |||||||| ||||| Sbjct 56473 GCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 56414 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 56413 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 56354 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| |||||||||||| | | || | | || | | ||| | Sbjct 56353 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 56294 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTAT 131246 ||| | || | ||| || || || | || || ||||| ||||||||| || ||||| Sbjct 56293 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG--TTCTTTTAG 56236 Query 131247 TC 131248 || Sbjct 56235 TC 56234 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| || || | || |||||||| || |||||||| |||||| Sbjct 56700 CCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 56641 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 56640 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 56581 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||||||||| | | || | | || | | ||| | | Sbjct 56580 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 56521 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || | || || ||||| ||||||||| Sbjct 56520 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 56473 >seq866 Length=11667 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| |||||| Sbjct 223 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 164 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || ||||||||||| ||| | || | ||||||||||| || ||| Sbjct 163 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 104 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||||||||| | | || | | || | | ||| | | Sbjct 103 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 44 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 || | ||| | || || || || | ||| || ||||| |||| Sbjct 43 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCT 1 >seq1135 Length=8246 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 4472 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4531 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || || || ||||| ||||| |||||||||||||| | | Sbjct 4532 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 4591 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 4592 CAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 4651 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 4652 AGATCTGCATGA 4663 >seq37 Length=75672 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| ||||||||||| || Sbjct 35966 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 36025 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 36026 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGG 36085 Query 131128 ATTCCT 131133 |||||| Sbjct 36086 ATTCCT 36091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471984019019520