Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000340395.2_202017-01-18] 4,878 sequences; 38,865,974 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq630 365 6e-96 seq311 131 2e-25 seq1175 123 3e-23 seq357 102 1e-16 seq337 93.3 5e-14 >seq630 Length=16726 Score = 365 bits (404), Expect = 6e-96 Identities = 846/1256 (67%), Gaps = 27/1256 (2%) Strand=Plus/Plus Query 6887 TTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTT 6946 ||||| | ||||| ||| || || | ||| || | | |||||| | || || || Sbjct 4435 TTCTTGGCTGGAACCGTGGTGTTGCGCGGGATCAGCTTGGTCATGACTCCGCCAGCCGTC 4494 Query 6947 TCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTG-AACAGATTCGTT 7005 || | ||||||||||| || | |||||||| || | |||||| || ||| || Sbjct 4495 TCCAAGCCAAGAGACAGCGGCGCCACGTCCAGTAGCAGCAGGTCCTGCAACTTGGACGA- 4553 Query 7006 CCCTTCAC--CCGTTAAG-ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATC 7062 | ||| ||| | || ||||| || || || || || ||||| || | || || || Sbjct 4554 CGAGTCATGGCCGCTCAGGATGGCCGCCTGCACTGTAGCACCGTACGCTATGGCTTCGTC 4613 Query 7063 GGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT-AACATTTGTTGAA 7121 ||||| || | || || | |||||||| ||| | || ||| |||| || || | Sbjct 4614 CGGGTTGATGGACTTGAAGAGCTTCTTACCGTTGAAAAAGTC-GATCAACAACTGCTGCA 4672 Query 7122 TTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGA 7181 |||||||| || ||||| || || || | || | || ||||| | | | | |||| Sbjct 4673 CCTTCGGGATACGAGTCGAGCCGCCCACTAGCACCACCTCGTTCACCTG-GCTCT-TCGA 4730 Query 7182 T--CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCAT 7239 ||| |||||||| || | | || || ||||| || || || || || Sbjct 4731 CAGCTTCGAGTCTCGTAGAACCTGCGCCACTGGGTCCATTGTCTTGCGAAAGAATTCACC 4790 Query 7240 ACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAA 7299 ||| || ||||| || || || || ||||||| | | |||||| || || || | Sbjct 4791 ACAAAGATCCTCGAACCGCGCGCGCGTAATGGTAGAGTTGAAATCGACACCATCCAGCAG 4850 Query 7300 CGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACA 7359 ||| ||||| || ||| | ||| || | | || | || ||||| || ||||| || Sbjct 4851 CGAGTCAATCTCGATGTACGCTTGCGCAGACATCGACAGTGTACGCTTGGCACGCTCGCA 4910 Query 7360 CGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACG 7419 |||||| || | ||| || || || |||| ||| | | ||||| || ||| || || Sbjct 4911 CGCCGTACGCAGACGCCGCAGCGCGCGCGAGTTCACCGTCATATCCTTGCGATGCTTGCG 4970 Query 7420 TTTAAACTCTT---CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAA 7476 || || |||| || |||| | ||| | || | ||||| ||||| || |||| Sbjct 4971 CTTGAATTCTTGCACAAAGAACT--CGACG-AGGCGGTTGTCGAAGTCTTCGCCGCCCAG 5027 Query 7477 GTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGA 7536 ||| || || || || ||||| || || || ||||| || ||||||| ||| | ||| Sbjct 5028 GTGCGTGTCGCCTGCCGTCGCCTTCACCTCGAAGATGCCGTCTTCAATAGTTAGAAGCGA 5087 Query 7537 AACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT 7596 ||||| || || || || |||||||| || || || ||||| || | | || Sbjct 5088 CACATCGAAGGTGCCGCCGCCCAGGTCGAAGATCAGCACGTTGTGCTCTCCACCCTT--- 5144 Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| || |||||||| || ||||| || || || || || || || ||||| || ||| Sbjct 5145 CTTGTCCAGACCGTAGGCAATAGCGGCGGCTGTCGGCTCGTTGATGATACGCAGCACGTT 5204 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || |||||||| | |||||||| ||||| ||||| ||||| ||||| |||||||| Sbjct 5205 CAAACCAGCAATGACACCGGCATCTTTGGTCGCCTGTCGCTGCGAGTCGTTGAAGTAGGC 5264 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 ||| ||||| || || |||| | | || | |||||| | || | |||||||| || Sbjct 5265 CGGCACCGTCACCACTGCGTTCTTCACCTGCTTACCAATGTAAGCCTCCGCGATCTCGCG 5324 Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTC-AGCCGCAAACTGTTTCGT-TTCACCG 7834 ||| ||| || ||||| || || ||||| || || | ||| || | | ||||| Sbjct 5325 CATCTTGACCAGCACCATGGACGAGATCTCCTCGGGCTGGAAA--GTCACCTGCTCACCT 5382 Query 7835 TTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894 || || | || | | || |||| | | | ||| | || ||| ||| ||| Sbjct 5383 TTGAACTGCACCACCACTTCCGGCTTATTCTCCGGACCTCGAGCCACTTTAAACGGCCAG 5442 Query 7895 TCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCA 7954 | | || || || || | |||| | ||||| | ||||| | |||||| || Sbjct 5443 TGCCTGATGTCCGACTGCACTTCAGGGTCGGTGAACTTGCGCCCGATCAAACGCTTGACA 5502 Query 7955 TCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGA 8014 ||||| || ||||| | | ||||||||| |||||||| |||||||| |||||||| Sbjct 5503 TCAAACACCGTGTTGTGCGCGTTCATGGCCACCTGGTTCTTGGCCGCGTCGCCGATAAGG 5562 Query 8015 CGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTC 8074 || || | ||||| || || ||||| || || ||||| || || || |||||||| Sbjct 5563 CGCTC---CGTGTCCGTGAAGGCCACGTAGGACGGTGTCGTGCGGTTGCCCTGGTCGTTG 5619 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 || || || || ||||||||||| ||||| ||||| |||||||| || || || || Sbjct 5620 GCGATGATCTCCACGCGGTCGTTCTGCCACACGCCCACGCACGAGTAGGTCGTGCC 5675 >seq311 Length=29585 Score = 131 bits (144), Expect = 2e-25 Identities = 451/696 (65%), Gaps = 17/696 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| || || |||| ||| || || || ||| || || || || | || Sbjct 15920 TCGAAATCCTCGCCGCCCAGGTGCGTGTCGCCGTTGGTGGCCAGCACCTCGAACACGCCA 15979 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || ||| | || || ||||| || || ||||||||||||||||| | || ||| Sbjct 15980 CCGTCGATGGCCAGCAGCGTCACATCGAAGGTGCCACCACCCAGGTCAAACACCAGCACG 16039 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | | | ||||| || | ||||| || || || || ||||| || || Sbjct 16040 TTCTTCTCGCCCTGTGCCTTCTTGTCAATGCCGTAGGCAATGGCAGCGGCCGTGGGCTCG 16099 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || || | || | | || ||||| || || | || || || || || || || Sbjct 16100 TTGATGATGCGCTGCACCG-TGAGTCCAGCGATGGTGCCGGCGTCCTTGGTAGCCTGACG 16158 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | ||||| |||||||| || ||||| ||||| ||||| || | |||| Sbjct 16159 CTGGGCGTCGTTGAAGTAGGCGGGCACCGTCACGACGGCGTCGAATACCTCGCGGCCGAT 16218 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || |||| ||| | ||||| ||||| || ||||| | || | ||| || | ||| Sbjct 16219 GTATCCCTCCGAGATCTGCTTCATCTTGGTGAGCACCATGGCCGAGACCTCCTCGGGCGC 16278 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 |||| | | || || || | ||||| | || | || || ||| | | Sbjct 16279 GAACTCGCGCTTCTCGCCCTTGACCTCAACCTGGATGAAAGGCTT-GCCG--TCCTTGTT 16335 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| | || |||| | ||| | ||| || ||| | ||| |||| | Sbjct 16336 GATGATCTCGTACGGCAGCAGCTTCTTGTCGGACTGCACCGACTTGTCGTTGTACTTGCG 16395 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| || ||||| | || || | || || | ||||| |||| | |||||||| Sbjct 16396 ACCGATGAGGCGCTTGACGTCGAACAGCGTCTTCTCCGGGTTGATGGTGGCCTGGTTCTT 16455 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATT---TTCCGTAAACGCGACGTACGATGGGGT 8052 ||| |||| ||||| || || || | || ||| ||||||||||||| || || Sbjct 16456 CGCGCCGTCGCCGATCAGGCGCTCGTCGTTCGAGTCC---CACGCGACGTACGAGGGCGT 16512 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC---GCGGTCGTTTTGCCAGACGCC 8109 | || || || |||||||| || || || || || |||| || | ||| ||| Sbjct 16513 GATACGGTTGCCCTGGTCGTTGGCGATGATCTCCACCTTCTGGTCCTTGT---AGATGCC 16569 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 |||||||| || || || || | || || ||||| Sbjct 16570 CACGCACGAGTAGGTCGTGCCCAGGTCGATGCCGAT 16605 >seq1175 Length=7759 Score = 123 bits (136), Expect = 3e-23 Identities = 449/699 (64%), Gaps = 14/699 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||| |||| ||| || || || | || | ||||| || ||||| || Sbjct 5694 TCGAAGTCCTCACCGCCCAGGTGCGTGTCACCGCCCGTGGACTTGACCTCGAAGATGCCG 5635 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | ||| ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 5634 TTCTCGATCGACAGGATCGACACATCGAAGGTACCGCCACCCAGGTCGAAGATGAGCACG 5575 Query 7577 TT------CGTATCGTC---GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 || ||| |||| | | |||| | || || |||||||||| || || ||| Sbjct 5574 TTGCAGGCCGTGCCGTCCGTGCCGGCGTTCGTGTCCAGGCCGTACGCGAGGGCAGCGGCC 5515 Query 7628 GTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGT 7686 || || || || || ||||| ||| || ||||||||| || | | || || || || Sbjct 5514 GTGGGCTCGTTGATGATACGCTTGAC-GTCCAGGCCAGCGATCGAACCGGCGTCCTTGGT 5456 Query 7687 CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTT 7746 || || || ||| ||||| |||||||| || || || || || || | ||| | Sbjct 5455 CGACTGACGCTGCTGGTCGTTGAAGTAGGCGGGCACGGTGACCACAGCCTGGCTGATGCT 5396 Query 7747 CTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 || || || | | || || | || ||||| || ||||| || || ||||| Sbjct 5395 CTGGCCCAGGAAGGCCTCAGCCGTCTCCTTCATGCGCAGCAGCACCATGGACGAGATCTC 5336 Query 7807 TTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGC 7866 || | | || ||| | ||||| || || || || || |||| | || || | Sbjct 5335 CTCGGGGGTGAAGCTCTTCTTGTCACCCTTGAACTCCACCTCGATCAGGACCTTGTCGTC 5276 Query 7867 AGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGA 7926 |||| | | | | | | | | || || | | ||| | ||| Sbjct 5275 GTCACCCTCCTTGATCGTGAAGGGGAAGTGCTTGGCGTCCTTCTTCACCACCTCGTCGCT 5216 Query 7927 AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGT 7986 || | | ||||| | |||||| || || ||||| ||||| ||| ||| ||| | Sbjct 5215 GAAGCTGCGGCCGATGATACGCTTGGCGTCGAAAACCGTGTTGGTGGCGTTACCGGCGGC 5156 Query 7987 TTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGA 8046 ||| |||| || || || ||||| ||||| || | || | || ||||| |||| Sbjct 5155 CTGGATCTTGGCGGCCTCACCGATGAGACGCTC---GCTCTCGTTGAAAGCGACCCACGA 5099 Query 8047 TGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGAC 8106 |||||||| || || || | | ||| || || || || || || ||| | ||| || Sbjct 5098 GGGGGTCGTGCGGTTGCCCTCGCTGTTGGCGATGATCTCCACCTGGCCGTCCTTCCACAC 5039 Query 8107 GCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 ||| |||||||| ||||| || || | ||||| ||||| Sbjct 5038 GCCCACGCACGAGTACGTCGTGCCCAGGTCAATGCCGAT 5000 >seq357 Length=27886 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 184205 ACACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCA 184264 ||| |||| |||||||||||| | ||| || | ||| ||||| |||||||| |||||| Sbjct 15329 ACAGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCGTACTGATCA 15270 Query 184265 CGACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATA 184324 || ||||| |||| |||||||| | || |||| || ||||||||||| || || | | Sbjct 15269 CGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCCTCAGTCAAA 15210 Query 184325 ATAAGAGTACACTTAC 184340 || || | |||| || Sbjct 15209 ATCAGCGAGCACTCAC 15194 >seq337 Length=28642 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/265 (68%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 7534 CGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTT 7593 ||| ||||| || ||||| ||||||||||| || | | | | | | ||||| | || Sbjct 12623 CGACACATCGAAGGTACCGCCACCCAGGTCGAAGACGGCGATGACCTTGCCGTCGGCCTT 12564 Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 || | | ||||| || | || || ||||| || ||||| || ||||| || Sbjct 12563 GTCCATG------CCGTAGGCCAGGGCAGCGGCCGTGGGCTCATTGATGATACGGAGCAC 12510 Query 7654 GTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 || ||| || || || |||||| | || || || || || || ||||| ||||| |||| Sbjct 12509 GTCCAGACCGGCGATC-TTGCCGGCGTCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGT 12451 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 ||||||| || || ||||| || | |||| ||| || || | || ||| | | Sbjct 12450 AGGCCGGCACGGTGACGACGGCCTGGGTGATGGGCTTGCCCAGGAAGCCGTCGGCGGTCT 12391 Query 7773 CTTTCATTTTGGTAAGAACCATCGA 7797 | ||||| ||||| || ||||| || Sbjct 12390 CCTTCATCTTGGTGAGCACCATGGA 12366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635094072777520