Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000340395.2_202017-01-18] 4,878 sequences; 38,865,974 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq35 105 5e-18 seq408 102 6e-17 seq866 91.5 1e-13 seq37 86.0 5e-12 >seq35 Length=76463 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || || || ||||| || || | ||| Sbjct 56463 AGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 56404 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || ||||| ||||| || || | || | ||||||| Sbjct 56403 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCC 56344 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || || || | | || || || | |||||| |||| ||| Sbjct 56343 TTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTG 56284 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| || || || || |||||||| Sbjct 56283 ATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 56246 Score = 105 bits (116), Expect = 5e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 48531 TAGTCGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTG 48590 |||| || ||||| | || |||| |||||| || || || ||| || || || ||| Sbjct 56709 TAGTTGTTTCCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTG 56650 Query 48591 TAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGA 48650 || || || | ||| |||| |||| |||||| ||||| || ||||| ||||| || Sbjct 56649 TAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGG 56590 Query 48651 TCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC 48710 || | || | |||||||||||| || || || || || | | || || || Sbjct 56589 TCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAA 56530 Query 48711 GCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | |||||| |||| ||| || || || |||||||| || || || || |||||||| Sbjct 56529 GGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 56474 >seq408 Length=24850 Score = 102 bits (112), Expect = 6e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 |||||| | | | ||| ||||||| | ||| |||||||| || | ||| || | ||| Sbjct 7797 AAGTCTTCGGCCGCATGGTTGAACAAGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCG 7856 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243 |||||||| || || ||||||||| | ||| | || || ||||| || ||||| | Sbjct 7857 ATCACACCGGCGCCAGTGTCGATGAATTTCTTAAGTGCGAGCCCAGAACGCGGCGCCACA 7916 Query 9244 CGACCGTAGCATCCCACCGGTAATTG-CACCCGCAAGTCGGTCATGACCAGCCCCTTGCC 9302 || |||| ||| ||| ||| || | |||| || ||| ||| |||| || |||||||| Sbjct 7917 CGCGCGTAACAT-CCAGCGGGAACGGCCACCACCAGGTCCGTCTTGACGAGGCCCTTGCC 7975 Query 9303 GTGTTTTGGAATCACGGTGTCGTAGCCG 9330 | |||||||| | ||||||| || Sbjct 7976 GCCCGCGGGAATCACAGCGTCGTAGGCG 8003 >seq866 Length=11667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| ||||| || ||||| ||| || || || ||||| || Sbjct 223 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 164 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| || || || ||||| ||||| || || | || Sbjct 163 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 104 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||| || || || || | | || || |||| |||||| Sbjct 103 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 44 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCT 48762 |||| || ||||| || ||||||||||| || || || |||| Sbjct 43 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCT 1 >seq37 Length=75672 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || ||||||||||| || ||||| ||||| || || ||| | || Sbjct 35975 AGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGG 36034 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 36035 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGG 36084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380914953021594