Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000340395.2_202017-01-18]
4,878 sequences; 38,865,974 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq179 450 1e-121
seq3581 187 2e-42
seq35 145 7e-30
seq866 136 4e-27
seq1135 131 2e-25
>seq179
Length=41763
Score = 450 bits (498), Expect = 1e-121
Identities = 1228/1850 (66%), Gaps = 64/1850 (3%)
Strand=Plus/Plus
Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012
||||| |||||||||||||||||||| ||| | ||| |||||| ||||| ||||
Sbjct 19220 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGT 19279
Query 148013 CATGAGCGTG-TA--CGTCGGGTGCGGCACAAACAGA---TTAAACGACTGGCTCTGGTC 148066
|| || || || |||||||| ||||| | || || | |||||||||||||
Sbjct 19280 CA---GCTTGCTAATCGTCGGGT-CGGCA--ATGTGAATGTTCAGCGACTGGCTCTGGCA 19333
Query 148067 AATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGC 148126
|||| | ||||||||||| || | || || | | ||| ||| |||||||| |
Sbjct 19334 AATGTAGGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACAC 19393
Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186
|||||||||| | ||||| || || |||||| | | |||||| ||||| |
Sbjct 19394 CGTCTTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACC 19453
Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246
|| || | |||||| ||||||| || ||| | | | ||||||||||| || |
Sbjct 19454 GTCAGCCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTT 19513
Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTT 148306
|| || |||| ||||| | | ||||| || || |||||||| || |||| |||
Sbjct 19514 CATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTT 19573
Query 148307 GCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGG 148366
||| |||| || | ||||| ||||||||||||||||| || |||| || |||||
Sbjct 19574 CGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGG 19633
Query 148367 CATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGC 148426
||| || || || ||||||||||| | ||| | || | | || ||| || ||
Sbjct 19634 CATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGC 19693
Query 148427 CGCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCC 148483
||||| ||||| | || ||||| || ||| |||||||||| |||| | || ||
Sbjct 19694 AGCCCAATCCCACAAGCCCGAAGACGGGGTGACGCCCCACATGTCGAACTGGAAGATACC 19753
Query 148484 GCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCA 148543
||| || || |||| | ||| |||||| || || || || | || ||
Sbjct 19754 CTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CA 19812
Query 148544 GCTCGC-CTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CAGCGC 148600
| | ||| | | ||||||| ||||||||| || | | ||||||| || |
Sbjct 19813 TCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGG- 19871
Query 148601 CGCCGACTCGCTTTCGTACGGCATACG-CAGCCGCACAAACGCGTCGGCAAGGCCCTGTA 148659
|| | ||| ||| ||| |||| || | | ||| || || || || ||||| |
Sbjct 19872 -GCTTGCGGGCTCTCGAACG-CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGA 19929
Query 148660 CGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGT 148719
|||| | |||| || ||||| |||||||| |||||| ||| | || ||||
Sbjct 19930 CGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGT 19989
Query 148720 GGTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC 148778
|||| ||| |||| ||||| |||| || || ||||||||| || | | ||||
Sbjct 19990 AGTTGACGTCAATGACCTTGTTCAAG-TTCCGGGTCACCACCTTGGTCACCTCGTACAGC 20048
Query 148779 AATTCAAAATCGTACTTG---------TCATCTACGATGCATCGGTTCACGGCGATAGAG 148829
||| | ||| ||| || || || | | | || | ||| | |||
Sbjct 20049 --TTC----TGGTAGTTGAACACTCCATCCTCCACAAA-CTTGGGG--AGGGCCACAGAC 20099
Query 148830 GCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGA 148889
|| || |||||||| ||| |||||| || | ||||||| | |||||| |||||
Sbjct 20100 GCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAG 20159
Query 148890 TTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTG 148949
||||| | |||| ||| | ||||| || || ||||| |||| ||||||||||
Sbjct 20160 TTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTG 20219
Query 148950 TACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACCGATGCAGG 149006
||||||||| |||| |||| || || | ||||| |||| ||| |||| |||
Sbjct 20220 TACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA---CAGC 20276
Query 149007 TCCTGCGCGCGCA-CTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCG 149065
| ||| || | | | ||| || ||| ||||||| |||||| |||||
Sbjct 20277 TGCTGGGCATTGATCGTCTTGCGCGC-GCGCCCCTCCTTCTCGTACTTCTCGTACAGAGT 20335
Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGA 149125
||||||| | ||||| |||| |||| ||| |||||| || | ||||| | ||
Sbjct 20336 CTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCT 20395
Query 149126 CCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185
|||| ||||| ||| | ||| |||||||| ||||||||||| ||||| || ||||| |
Sbjct 20396 CCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAA 20455
Query 149186 GAGGT--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTG 149243
||||| ||||||| ||||| ||| ||| ||| |||||| | || | |
Sbjct 20456 GAGGTCGCGCGCGCGGTGCAG--CTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCG 20513
Query 149244 AATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCG 149300
|| | ||| |||||||||||||| | ||| | |||| || ||| ||||||||| ||
Sbjct 20514 AACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCT 20573
Query 149301 CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTG 149360
|||||||| || | ||| || ||| || || || | | ||| || || || ||
Sbjct 20574 CCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTG 20633
Query 149361 GCAGTGCCGTTAGTAGAGCTAATGCGACTG-CCGCGCGCTCGCACTTTGTGCACGTTGAC 149419
| | ||||| || || ||| ||| || | || || | ||||||| | | |
Sbjct 20634 GATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTG-GCGCGGATGTTGTGCATGCTAAT 20692
Query 149420 GCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCC 149479
||| || || ||| | |||| |||||| |||||| | |||||| ||| |||||
Sbjct 20693 GCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCC 20752
Query 149480 CTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGT 149539
||| || |||| || ||||| |||||| || ||||| ||| |||||| ||||
Sbjct 20753 CTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGT 20812
Query 149540 GCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTA 149599
|||||| || | ||||| | ||||| ||||| | |||| ||| | ||| ||
Sbjct 20813 GCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCATA 20872
Query 149600 CGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659
|| | || | | ||||| | || || || | || |||||||| | |||
Sbjct 20873 CGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCAT 20932
Query 149660 ATGCTGCGGTCGCTCCGCCACTTT--GTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGT 149717
||||| || |||||| | || || ||| | || | |||||| || ||
Sbjct 20933 CTGCTGGGGGCGCTCCACGACCTTACCGTTC--ACGCGGAAGAGGTAGCCTCGCTCAAGC 20990
Query 149718 GTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767
|||||| |||| ||||| | ||| |||||||| ||| ||||| |||||
Sbjct 20991 GTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGC 21040
>seq3581
Length=1496
Score = 187 bits (206), Expect = 2e-42
Identities = 511/769 (66%), Gaps = 23/769 (3%)
Strand=Plus/Minus
Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413
||||||||| ||||| ||||| || ||||| || ||||||| || ||| || | | |||
Sbjct 1256 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCAT 1197
Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACT--GTACGAGCAGT 120471
| ||||||||||| || |||| || || | || || || | | |||| |||||
Sbjct 1196 CCAGTCGAACGGGTTCTTCACGTTGTAG-ATCTTGGATGCACCCAGTGAGTAC-AGCAGG 1139
Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCC 120531
||||| || || ||||| ||||||| ||||||| | | ||||||||| | || | ||
Sbjct 1138 CGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCC 1079
Query 120532 ACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590
|| || | || | || | | ||||| | |||||| |||| || || | || ||
Sbjct 1078 ACGGGGAGCG-AGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGC 1020
Query 120591 GAGCATAGTGTGGC---CGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTAC---AGGCA 120644
| ||| | ||| | |||| || ||||| | |||| ||||| |||||
Sbjct 1019 GTGCA---CGCGGCTCTCCGGCAGCT--TGTTC--ACCAACTTCG--AGTACATGAGGCA 969
Query 120645 CGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCC 120704
||| ||||||||||||| ||||||||| || || |||||||| || |||| ||
Sbjct 968 CGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACC 909
Query 120705 GGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACAC 120764
||||||| ||| | |||||| |||| |||| | ||| ||||| ||||| |
Sbjct 908 AGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAAT 849
Query 120765 GCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGAT 120824
|||||||||| ||| || || | || ||||| | | | || |||
Sbjct 848 GCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACA 789
Query 120825 CCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAG 120884
|||||| | ||||| |||||| || ||||||||| ||| ||||| || |||
Sbjct 788 CCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAG 729
Query 120885 CAGCATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTC 120944
|| || ||| | | ||| || | | ||| ||||| ||||| ||
Sbjct 728 CAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTC 669
Query 120945 CGTGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTCCAGCTCGGG 121004
|| ||| | | |||||| | || | ||| ||| | | |||||| || | |
Sbjct 668 CGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTG 609
Query 121005 CACCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGA 121063
|||| | |||| | | ||| ||||| |||||||| | |||| ||| ||||
Sbjct 608 CACCTCATTGCTGAAGTTCATCG-CCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGA 550
Query 121064 AGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTT 121112
|||| || |||||||||||||| ||||| ||||||| |||||| || ||
Sbjct 549 AGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTT 501
>seq35
Length=76463
Score = 145 bits (160), Expect = 7e-30
Identities = 153/199 (77%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| |||| || |||| ||| |||||| |||||||||||
Sbjct 56442 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 56384
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || |||||||||||||| |||||||| |||||||| ||| || |||||
Sbjct 56383 GGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTT 56324
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | | ||| | ||||||||||| | |||| ||| ||||| |||| ||
Sbjct 56323 CACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGT 56264
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 56263 CTTCACGAAGATCTGCATG 56245
Score = 145 bits (160), Expect = 7e-30
Identities = 153/199 (77%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| |||| || |||| ||| |||||| |||||||||||
Sbjct 56670 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 56612
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || |||||||||||||| |||||||| |||||||| ||| || |||||
Sbjct 56611 GGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTT 56552
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | | ||| | ||||||||||| | |||| ||| ||||| |||| ||
Sbjct 56551 CACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGT 56492
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 56491 CTTCACGAAGATCTGCATG 56473
>seq866
Length=11667
Score = 136 bits (150), Expect = 4e-27
Identities = 146/193 (76%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| || ||||| |||| || |||| ||| || |||||||||||
Sbjct 193 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCA 134
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| |||| || ||||||||||| || ||||||||||||||||| || || |||||
Sbjct 133 GCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTC 74
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | || ||| | ||||||||||| | ||||| || ||||| |||| |||
Sbjct 73 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTC 14
Query 133644 TTTACGAAAATCT 133656
|| ||||| ||||
Sbjct 13 TTCACGAAGATCT 1
>seq1135
Length=8246
Score = 131 bits (144), Expect = 2e-25
Identities = 123/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||||||||||||||| ||| | || || ||||||||||| || || |||||||||||
Sbjct 4506 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTT 4565
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| ||| || ||||||| | |||| |||||| ||||| ||||| | ||||
Sbjct 4566 GTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCTACGTCCAGCGTGAT 4625
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661
||| ||||| ||||| || || || || |||||||||
Sbjct 4626 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483391323416720
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