Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000340395.2_202017-01-18] 4,878 sequences; 38,865,974 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq179 174 2e-38 seq3581 109 6e-19 >seq179 Length=41763 Score = 174 bits (192), Expect = 2e-38 Identities = 1101/1748 (63%), Gaps = 62/1748 (4%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||||||||| | |||||||| | ||||||| | | | Sbjct 20942 CCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATTCACAAGCAAGACATCCAGGCGGC 20883 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 104337 || | || || || ||||| || |||||| || ||||| || || || || Sbjct 20882 ACTGCACACGTATGAGCTCATGTCACA---GATGTTCTTTACGCACGCGACGCCCACGCT 20826 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 ||| || || || || || | || || |||| || ||||| | |||| |||| Sbjct 20825 CTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGTTTCCTGCTGGCCATGCAGGA 20766 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 ||||| || | || || || | || || | | |||| ||| ||||| |||||||| Sbjct 20765 CGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGC 20706 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || ||| || | | | |||| || | || || || || | Sbjct 20705 CGGAGGTATTGGCATTAGCATGCACAACATCCGCGCCACGAACAGCT-ACATCCGCGGCA 20647 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || ||| | || || || || ||||| | || || || | ||| || |||| Sbjct 20646 CGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAATGACACGGCCCGCT 20587 Query 104577 ATGTAAATCA---AGCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 |||| | || || || || || || || |||| |||| || ||||| |||| Sbjct 20586 ATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTACCTGGAGCCGTGGC 20527 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| || | | |||||||| ||| |||| ||||| || |||| | || | | Sbjct 20526 ACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGCAACGA-GCTGCACCGC 20468 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||| ||||||| |||||| ||| | || ||||| ||||||||| | || || | | Sbjct 20467 GCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCG 20408 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | ||||| ||| || || || || | |||| || || |||| ||| ||| | ||| Sbjct 20407 AACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTACGAGTGCTG-GGG 20349 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 || ||||| || | || ||| ||||||||| | || || || ||| |||| | Sbjct 20348 CGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCGCGCGCAAGACGAT 20289 Query 104872 -----GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 ||||| || ||||| || || || | | || | ||||| || Sbjct 20288 CAATGCCCAGCAGC-----TGTGGTTCGCCATCCTGGACGCGCAGATTGAGACGGGCGTG 20234 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| ||||| |||| ||| || || |||| | || | Sbjct 20233 CCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACG 20174 Query 104987 AT---CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 || | ||| ||| | || || || |||| | || |||||| | Sbjct 20173 ATCCGCTCGAG---CAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCGATGAGGTG 20117 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 105103 || ||||| ||||| || || | || |||||||||| |||||| || || Sbjct 20116 GCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGA-----GGATGGAG-TG 20063 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 || | || | || || |||| || || || || ||| ||| | |||| || Sbjct 20062 TTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGAACAAGGTC 20003 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 ||||| || | |||||||| ||| || || || || || ||| | ||||| || Sbjct 20002 ATTGACGTCAACTACTACCCCGTGGAGGAGGCGCGCAAGTCCAACATGCGCCACCGCCCG 19943 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT 105283 ||||| | || || |||||||||||||||| ||| || || | | || || || Sbjct 19942 GTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTATCCTCATGAACTATGCGTTCGAG 19883 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 | |||| ||| |||| | ||| || ||||| || || |||| || | Sbjct 19882 AGCCCGCAAGCCCGTGAACTCAACATGAACATCTTCGAGACGATCTACTACGCTTCTATG 19823 Query 105344 GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 ||| | ||| | || ||| || || || || || || |||| || || Sbjct 19822 GAGACCTCGATGGAGATCGCCAAGGAGCTGGGCCCGTACGAGACGTTCCAGGGATCGCCT 19763 Query 105404 GCTTCA-CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC----- 105455 || || |||||| ||| || || || |||||| || | ||| | |||| Sbjct 19762 GC--CAGCAAGGGTATCTTCCAGTTCGACATGTGG---GGCGTCACCCCGTCTTCGGGCT 19708 Query 105456 ACTACGACTGGGAAGCTCTCAAG--GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTC 105512 | || |||| || |||||| ||||| |||| || | || | || ||| | Sbjct 19707 TGTGGGATTGGGCTGCGCTCAAGGAGAACGTGATCA---AGCACGGCATCCGCAACTCGC 19651 Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572 ||||| ||||||| ||||| || || || || || || || ||||| || ||||| | | Sbjct 19650 TCCTCGTGGCTCCGATGCCCACTGCGTCGACGGCTCAGATTTTGGGCAACAATGAGTCCA 19591 Query 105573 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 105632 | || || |||||| ||||||| || | | || || || ||||| ||| | Sbjct 19590 TCGAGCCGTACACGTCGAACATGTACAACCGCCGCGTGCTGGCTGGTGAGTTCACGATCG 19531 Query 105633 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 105692 | |||||| | ||| || | || || | ||| | || ||||| | || || Sbjct 19530 TGAACAAGTACCTCATGAAGGAGCTGATCGAGCTGGGCATCTGGACGCCTGAGGTGCGCA 19471 Query 105693 ATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGA---TATTCCAAATGAAA 105749 | | || || | ||||| ||| | || || ||| | ||||| | | Sbjct 19470 ACCAGATTCTGGCTGACGGTGGCTCCGTGCAGAA---GGTGAAATCCATTCCGGACCAGG 19414 Query 105750 TTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCG 105809 | ||| || |||| || || ||||| |||||| ||||| || | ||| || | | Sbjct 19413 TCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCCGTGTTGGACCTGTCGG 19354 Query 105810 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAA 105869 | || ||||| || |||| || || || |||| | ||| | || | Sbjct 19353 CGGACCGTGGCGCCTACATTTGCCAGAGCCAGTCGCTGAACATTCACATTGCCGACCCGA 19294 Query 105870 CGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGA 105929 |||| |||||| | || |||||| | ||| ||||||||||| ||||| ||||| | Sbjct 19293 CGATTAGCAAGCTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCA 19234 Query 105930 TGTATTAC 105937 |||| ||| Sbjct 19233 TGTACTAC 19226 >seq3581 Length=1496 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| || |||||||| |||||||||||| | || | |||||||||||||| || Sbjct 840 GTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 899 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| ||||| ||||||| |||||||| ||| || |||||||| Sbjct 900 CTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583225235672720