Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F000340395.2_202017-01-18] 4,878 sequences; 38,865,974 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq179 338 7e-88 seq35 131 2e-25 seq3581 127 2e-24 seq1135 127 2e-24 seq357 125 8e-24 seq866 105 8e-18 >seq179 Length=41763 Score = 338 bits (374), Expect = 7e-88 Identities = 1139/1748 (65%), Gaps = 54/1748 (3%) Strand=Plus/Plus Query 80036 GCGTCCGCAGAT--AGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 |||||||| || ||||||||||||||||||| |||||||||||| |||| | |||||| Sbjct 19214 GCGTCCGCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT 19273 Query 80094 AGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || | ||||| || || |||| | ||| |||||||| ||||| ||| || Sbjct 19274 GGACGTCAGCTTGCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCA 19333 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213 ||| | || ||||| || |||| || || | | | ||| || || ||||| || Sbjct 19334 AATGTAGGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACAC 19393 Query 80214 TGTACGATACACCTTACGAAGCTCCTCTGGAATG---TCCAGATTTTGCACACTGCCACC 80270 || ||| || | || || |||||| | || || ||||| |||||| Sbjct 19394 CGTCTTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACC 19453 Query 80271 GTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTT 80330 ||| | ||| || || || |||| |||||||| || |||| | ||| || || Sbjct 19454 GTCAGCCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTT 19513 Query 80331 CACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTT 80390 || |||| |||||| | || ||||| || || || ||| || |||| ||| Sbjct 19514 CATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTT 19573 Query 80391 TGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGG 80450 | ||||| ||||| | | ||| ||||| || | ||||||||||| ||| || || Sbjct 19574 CGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGG 19633 Query 80451 CATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCT---TCTTGATATCCT--CGCGC 80505 |||||| | || | || || || || | |||||||| || | | |||| |||| Sbjct 19634 CATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGC 19693 Query 80506 A----AATCTGACCAAAAATCAACCCCA--ACGCTGTGA--CCCCACATGTCGTGCTGCA 80557 | |||| ||| | | ||| | ||| |||| |||||||||||| ||| | Sbjct 19694 AGCCCAATC---CCACA----AGCCCGAAGACGGGGTGACGCCCCACATGTCGAACTGGA 19746 Query 80558 AGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCA 80617 |||| |||| || || || ||| ||||||||||||||||||| | |||||| | Sbjct 19747 AGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGA 19806 Query 80618 GCTCACACGA---CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA 80674 ||| ||| ||||||| | |||| || || ||| |||| | | |||| | Sbjct 19807 TCTCCATCGAGGTCTCCATA---GAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGA 19863 Query 80675 CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGC 80734 | || || || ||| ||||||| || ||| | || || | || || || | Sbjct 19864 GTTCACGGGCTTGCGGGCTCTCGAACGCATAGTTCATGAGGATAAATGCATCCGCGAGAC 19923 Query 80735 CCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATT 80793 |||| ||||| || | | ||||||||||||| |||| || | || | |||||| | Sbjct 19924 CCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGC-GCCTCCTCCACG 19982 Query 80794 GGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCA 80853 ||||| |||| || ||||| ||||| ||| || || || ||| || || || Sbjct 19983 GGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCG 20042 Query 80854 TGAAGTTTCTGAAAGTCGAATTGGTTCC--CCTTCACAAATGCCGGAAGGCTCAGGGACG 80911 | || ||||| ||| ||| ||| ||| |||||| || ||| || |||| Sbjct 20043 TACAGCTTCTGGTAGTTGAA--CACTCCATCCTCCACAAACTTGGGGAGGGCCACAGACG 20100 Query 80912 CCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAAT 80971 |||| |||||||| |||||||| || | || |||| | || || |||||| | Sbjct 20101 CCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAGT 20160 Query 80972 TAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGT 81031 | || || || || ||||| | |||||| |||||| |||| |||||||||| Sbjct 20161 TGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGT 20220 Query 81032 AGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGC 81091 | |||| |||| || ||||| | ||| | | ||||||||| ||| | || Sbjct 20221 ACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCT 20280 Query 81092 GCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCG 81150 | || |||| | |||||| || || | | ||||| |||| || || ||| Sbjct 20281 GGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAGTC-TCG 20339 Query 81151 AACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAG 81210 |||| | | || || ||| | ||| ||| || ||||| | ||| ||| Sbjct 20340 AACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCTCCAC 20399 Query 81211 TCGGTGTCGTTC---TCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAAC 81267 | || ||||| || ||| ||||||||| || |||| ||| || ||| ||| Sbjct 20400 T---TGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAG 20456 Query 81268 AGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATG 81327 |||||||| ||| | ||| | || ||||| ||||| ||| || || || | Sbjct 20457 AGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAAC 20516 Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCC 81384 | ||| || ||||| |||||||| || | ||||| ||| || ||||| | || ||| Sbjct 20517 ACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCC 20576 Query 81385 TGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGAC 81444 |||| || || ||||| || | || || || | || ||| |||||||| || | || Sbjct 20577 TGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGT-TGGA 20635 Query 81445 TGA-CCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACC 81503 ||| |||||||| || ||| | ||||||| | ||| || || || Sbjct 20636 TGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATGCTAATGCC 20695 Query 81504 GATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTC 81563 || || || | |||||| || || || ||| | || | || || ||||| ||||| Sbjct 20696 AATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTC 20755 Query 81564 GATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCC 81623 || || | | |||| | |||| |||||| |||| ||| || | | ||| Sbjct 20756 AATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCC 20815 Query 81624 GGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC-GGTTTGACATCAGGTCATAGG 81682 ||| || || || || || |||||||| | ||| ||| | |||||| || ||||| | Sbjct 20816 GGCGTTAAAGAGCGTGGGCGTCGCGTGCGT-AAAGAACATCTGTGACATGAGCTCATACG 20874 Query 81683 T-TTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATG 81741 | | | || ||| ||| || || | ||||||||| | || || ||||| | ||| Sbjct 20875 TGTGCAGTGCCGCCTGG-ATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCATC 20933 Query 81742 TACTGGGG 81749 | |||||| Sbjct 20934 TGCTGGGG 20941 >seq35 Length=76463 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || |||||||| || || || || || ||| | Sbjct 56474 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 56533 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||| | || ||||| ||||| || ||||||||||| || || || |||||| Sbjct 56534 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 56593 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 56594 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 56652 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || | || ||||||||||||| ||| Sbjct 56653 CATCCAGAAGGAGTCTACACTGCACTTGGTGCTGCGTCTTCGCGGCGGA 56701 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || |||||||| || || || || || ||| | Sbjct 56246 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 56305 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||| | || ||||| ||||| || ||||||||||| || || || |||||| Sbjct 56306 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 56365 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 56366 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 56424 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || ||||||| || ||||| Sbjct 56425 CATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 56472 >seq3581 Length=1496 Score = 127 bits (140), Expect = 2e-24 Identities = 351/533 (66%), Gaps = 5/533 (1%) Strand=Plus/Plus Query 64319 TGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCG 64378 ||||| || | |||||||| || || |||||||||| ||||||| | || || | Sbjct 418 TGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGG 477 Query 64379 CCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTG 64437 | || || | ||||||| ||||| | | ||| || | |||||||||||| Sbjct 478 TGCACGACCTGAAGGACTGGGGGAACCTGA-CGGACAACGAGCGCCACTTCATCAAGCAC 536 Query 64438 GTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTT 64497 || |||||||||||||| | || ||||| || ||| ||||| ||| | || || Sbjct 537 GTGCTAGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCGATGAACTTC 596 Query 64498 ACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAA 64557 | || || || || | || ||||| || | ||||| | | ||| | ||| Sbjct 597 AGCAATGAGGTGCAAGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAG 656 Query 64558 AGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAG 64617 | || || ||| ||| ||||| |||| |||| || | ||| | || ||| Sbjct 657 AACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCGTGGAG 716 Query 64618 AAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGG 64677 |||||| || | | || || ||||| | || || || ||||| ||| Sbjct 717 AAGGATCACTTGCTGCGTGCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGG 776 Query 64678 GCCATCCGGTGGA-TGAA--TCGTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCC 64734 || || |||| ||| ||||| ||||| | ||||||| || || ||| Sbjct 777 GCGCTCAAGTGGTGTGACCCTCGTGTTTCGTCCTACCCGGAGCGTCTGCTGGCGTTCGCC 836 Query 64735 TGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGG 64794 ||||| || |||||||| || || || ||||| || || |||||||| || ||||| Sbjct 837 GCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGC 896 Query 64795 GGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 ||||| ||||| |||||| || ||||||||||| ||| ||||||||||| Sbjct 897 GGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGG 949 >seq1135 Length=8246 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 4664 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCG 4605 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| ||||||||||| || ||||| || ||| Sbjct 4604 TCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGAC 4545 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || || || | ||||| Sbjct 4544 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 4485 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 4484 AACATCCAGAAGG 4472 >seq357 Length=27886 Score = 125 bits (138), Expect = 8e-24 Identities = 210/302 (70%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 31950 TGAAGATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAA 32009 || ||||| | |||| || | || |||| |||||||| ||| || ||||| || Sbjct 15963 TGCAGATAACCAGCGATCGCTGCCCTCGGTGGTTGACGGCCTGAAGATCTCGCAGCGTAA 16022 Query 32010 GGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTC 32069 |||| | | ||| ||||| || || || |||| || | |||||||| |||||| | Sbjct 16023 GGTGCTTTTCGCATGCCTGAAACGTAAGCTAACGAGCGAGGTTAAGGTGGCACAGCTGGC 16082 Query 32070 GGGCTACGTGGCAG--AGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACC 32127 ||||||| |||| |||| ||||| || ||||| ||||| || || || || || Sbjct 16083 GGGCTACT--GCAGTGAGCATACGGCTTACCACCATGGCGAAGCTTCACTGCACTCGACG 16140 Query 32128 ATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCT 32187 ||||||||| | || ||| | || || || | || ||||| | | | || || Sbjct 16141 ATTGTCAACATGGCGCAGGATTTCGTGGGATCCAACAACCTTCCGCTGTTGTATCCTTCA 16200 Query 32188 GGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTC 32247 || || || || ||||| || || ||||||||||| || ||| | |||||||||||| Sbjct 16201 GGTCAATTCGGTACCCGTCTGCAAGGAGGCAAGGATGCCGCTAGCCCTCGTTACATCTTC 16260 Query 32248 AC 32249 || Sbjct 16261 AC 16262 >seq866 Length=11667 Score = 105 bits (116), Expect = 8e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 ||||| || ||||| | || |||||||| || || | || || ||| | || Sbjct 3 ATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCGGACTCG 62 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | || ||||| ||||||||||||||||| || || || || ||||||||||| Sbjct 63 ATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGC 122 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCA 27590 || ||||| ||||| ||||| || || || | || || || ||| ||||| || |||| Sbjct 123 CTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGC-GACTACAACATCCA 181 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || || || || || ||||||| || || || Sbjct 182 GAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570275625323360