Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278135.1_202015-09-02] 4,624 sequences; 41,972,889 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq343 194 2e-44 >seq343 Length=44246 Score = 194 bits (214), Expect = 2e-44 Identities = 394/585 (67%), Gaps = 0/585 (0%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| |||||||| || || || |||||||| || | ||||| || || || || Sbjct 17218 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17159 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | | || | | || || || | || ||||| | |||||| || ||||| Sbjct 17158 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 17099 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || |||||||| ||||||||||||||| ||| || || | ||||||| Sbjct 17098 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 17039 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCC 145923 ||||||||||||| ||||| | | |||||| || ||||| ||||| || ||| || Sbjct 17038 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCA 16979 Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCT 145983 || |||||||| || | | |||| || | | | |||||| | | || Sbjct 16978 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGA 16919 Query 145984 ATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTAC 146043 |||| || ||||||||||||||||| || ||| || || | |||| |||| Sbjct 16918 ATCACCTCAGCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTCCGTGTAC 16859 Query 146044 GCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTG 146103 ||| || || || | ||||||||| |||||||| || || ||||| || || | Sbjct 16858 CTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCACTTCGCGC 16799 Query 146104 TGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG 146163 | || || | | | | | || |||||||| || |||||||||| | | | Sbjct 16798 GACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGATGTGAATG 16739 Query 146164 CCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCG 146223 || || ||| | | | |||| || || |||||||| |||||||| || Sbjct 16738 TCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAGCTCCTCC 16679 Query 146224 AGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 || || | |||||| || | |||||| || ||||| |||||| Sbjct 16678 GCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAAC 16634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590042693560960