Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278135.1_202015-09-02] 4,624 sequences; 41,972,889 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq343 122 6e-23 >seq343 Length=44246 Score = 122 bits (134), Expect = 6e-23 Identities = 359/548 (66%), Gaps = 13/548 (2%) Strand=Plus/Minus Query 25425 AGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCC 25484 || || || ||||| | ||| || || || ||||| || | | ||| | ||| || || Sbjct 17218 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17159 Query 25485 GGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTA 25544 |||| | ||| | || | |||| | ||| || || |||||| || |||||| Sbjct 17158 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 17099 Query 25545 AAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC 25604 || || || || | |||||||| || || | |||||| | ||||||||| | ||| | Sbjct 17098 AACGGCACACCAAGACCCATGTCGGCC-GAGCGCTGGTACATCTGACACGACAACTCCCC 17040 Query 25605 GTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTC 25664 ||| |||||| || || || | ||| |||||| || || || || | || || Sbjct 17039 GTCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATC 16980 Query 25665 TTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT-GTCC----CTGATA 25719 ||||||||| || ||| | ||| | | ||| ||||| || | || | Sbjct 16979 AGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTG 16920 Query 25720 AGATCCGCGGTGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTC 25778 | ||| | | ||| |||| ||||| ||| || | |||||| | |||||| Sbjct 16919 A-ATCACC-----TCAGCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTC 16866 Query 25779 CGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATC 25838 ||||||| || || |||| | ||||||||| ||||| || ||||| ||||| || | Sbjct 16865 CGTGTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCAC 16806 Query 25839 TTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGAT 25898 ||| | || || || | | |||||| | |||| ||| ||||| |||||||||| Sbjct 16805 TTCGCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGAT 16746 Query 25899 CTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAG 25958 | | |||||| ||| | | | | ||| || || | |||||||||||| Sbjct 16745 GTGAATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAG 16686 Query 25959 CTCCGCCG 25966 |||| ||| Sbjct 16685 CTCCTCCG 16678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340118431545552