Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278135.1_202015-09-02] 4,624 sequences; 41,972,889 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq274 244 1e-59 seq43 150 2e-31 seq268 127 2e-24 seq712 107 2e-18 seq298 96.9 3e-15 >seq274 Length=57108 Score = 244 bits (270), Expect = 1e-59 Identities = 952/1469 (65%), Gaps = 38/1469 (3%) Strand=Plus/Minus Query 145030 CTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACG 145089 || ||||| || | || | ||||| || |||| | ||||| || |||| ||| || Sbjct 31573 CTCGATCAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCG 31514 Query 145090 ACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGC 145149 || |||| ||| |||||| | || || | ||||| || ||||||| || ||||| Sbjct 31513 GCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGC 31454 Query 145150 GGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGAT 145209 |||| || |||||||| ||||| | | || ||||| | ||||||||| | | Sbjct 31453 CGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCAC 31394 Query 145210 GTCTTCCTTTAGCGTACCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTC 145266 || ||||| |||| | |||||||||| | ||||| ||| | ||| |||||||||| Sbjct 31393 GTTCTCCTTGAGCGCAGCCCAATCCCACAAGCCCGAAGACGGGGTGACGCCCCACATGTC 31334 Query 145267 GTACTGCAAAATGCCCTCGCTGGC-GGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAG 145325 | |||| || || |||| |||||| || | | ||| ||| | || || | |||| Sbjct 31333 GAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACG--TCTCGTACGGGCCCAGC 31276 Query 145326 T-TTTGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTG 145383 | ||||||| ||| || | | ||||| || || | || || |||||| || | Sbjct 31275 TCCTTGGCGATCTC-CATCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 31217 Query 145384 CCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCAT-GCGCAGCAGTACAAAAGCAT 145442 | ||||||| |||| ||||||| || |||| | || || | ||| |||| Sbjct 31216 CATGTTGAGTTCACGGGCTTGCGGGCTCTCGAAC-GCATAGTTCATGAGGATAAATGCAT 31158 Query 145443 CGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCG 145502 | ||||| ||||| | || | || | || || || ||||||| | | | |||| Sbjct 31157 CCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCT 31098 Query 145503 ACTCGATAGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTT 145561 ||| | || || | | | || ||| || | || |||||||| || || ||||| Sbjct 31097 CCTCCACGGGGTAGTAGTTGAC-GTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTG 31039 Query 145562 GTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTG 145621 || | | || ||| | ||| ||| ||| || | ||||| | | | Sbjct 31038 GTCACCTCGTACAGCTTCTGGTAGTTGAAC----ACTC--CATCCTCCACAAACTTGGGG 30985 Query 145622 ACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGAT 145680 | ||| | ||||||| || || || ||| ||| || |||| || |||| | | || Sbjct 30984 AGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAAT 30926 Query 145681 CTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT 145740 |||| |||||| ||||| | ||| || || || || ||||| || || | ||| Sbjct 30925 CTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTT 30866 Query 145741 GCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--A 145798 | |||||||||||| |||||| |||| |||| ||||| | ||||| |||| ||| Sbjct 30865 GGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGC 30806 Query 145799 AAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTC 145858 ||| || | ||| ||| | | || | ||| ||||| | ||||| ||| Sbjct 30805 GAAC--CACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTC 30748 Query 145859 CTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGA 145918 ||| || ||| ||| || || |||| ||| | || ||||| || ||||| Sbjct 30747 TCGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGG 30688 Query 145919 CACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCAC 145978 || | || ||| |||||| || | || |||| ||| |||| ||| || |||||| Sbjct 30687 CAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCAC 30628 Query 145979 AGCGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAA 146034 || ||||| | | || ||||||| |||| ||| | || || ||| || || Sbjct 30627 AGAGCGTAGAAGAGGTCGCGCGCGCGGTGCA--GCTC-GTTGCCGTGGTTCTTGC-GCAG 30572 Query 146035 ATTAAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTT 146093 | || | ||| | | ||| ||||||||||| || | |||| ||||| | |||| Sbjct 30571 CTCCAGGA-ACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTT 30513 Query 146094 TTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGG 146150 | || ||| || ||||||||||| | || || ||| || ||||| | || ||||| Sbjct 30512 TGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGG 30453 Query 146151 GCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGC 146210 | || ||| ||| | |||||||| | || | || || ||| | | Sbjct 30452 GGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGT 30393 Query 146211 AATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCG 146270 || | | | | ||| | ||| ||| | ||||||| || ||||| | ||||| Sbjct 30392 TGTGCATACTGATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCG 30333 Query 146271 TCTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCT 146330 | ||||| ||||| ||||| ||| | ||| | ||||| || ||||| ||| || Sbjct 30332 TGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCT 30273 Query 146331 GCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGC 146390 ||| |||||| || || || | ||| || ||||||||||||| | | | Sbjct 30272 GCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTG 30213 Query 146391 TCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGA 146450 ||| | | |||||| | | || | || ||||| | ||||| |||| || | Sbjct 30212 ACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCA 30153 Query 146451 CGCGCATGAGCATGTGTTGGGGCCGCTCC 146479 ||||||||| ||| || ||||| |||||| Sbjct 30152 CGCGCATGATCATCTGCTGGGGGCGCTCC 30124 >seq43 Length=72582 Score = 150 bits (166), Expect = 2e-31 Identities = 179/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| || || | || |||||||| || |||||||| ||||| Sbjct 19629 GCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 19688 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 19689 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 19748 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| |||||||||||| | | || | | || | | ||| | Sbjct 19749 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 19808 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTAT 131246 ||| | || | ||| || || || | || || ||||| |||||||||| | ||||| Sbjct 19809 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGA--TCTTTTAG 19866 Query 131247 TC 131248 || Sbjct 19867 TC 19868 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| || || | || |||||||| || |||||||| |||||| Sbjct 19402 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19461 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 19462 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19521 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||||||||| | | || | | || | | ||| | | Sbjct 19522 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 19581 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || | || || ||||| ||||||||| Sbjct 19582 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19629 >seq268 Length=48198 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||||||| | || | || |||||||| || |||||||| ||||| Sbjct 15769 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 15828 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||| || ||||||||||| ||| | || | ||||||||||| || || Sbjct 15829 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 15888 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||||||||||| | | || | | || | | ||| | Sbjct 15889 GATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 15948 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | ||| | || || || || | ||| || ||||| |||||||| Sbjct 15949 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 15996 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| |||||| Sbjct 15542 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15601 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || ||||||||||| ||| | || | ||||||||||| || ||| Sbjct 15602 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 15661 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||||||||| | | || | | || | | ||| | | Sbjct 15662 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 15721 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || || || | ||| || || || ||||||||| Sbjct 15722 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 15769 >seq712 Length=16626 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || ||||||||||| | ||||| |||||| ||||||||||| ||| ||| Sbjct 12871 CCTTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12930 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || || || ||||| ||||| |||||||||||||| | | Sbjct 12931 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 12990 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 12991 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 13050 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 13051 AGATCTGCATGA 13062 >seq298 Length=68069 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| ||||||||||| || Sbjct 34427 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 34368 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 34367 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGG 34308 Query 131128 ATTCCT 131133 |||||| Sbjct 34307 ATTCCT 34302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471985517660160