Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278135.1_202015-09-02] 4,624 sequences; 41,972,889 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq274 381 6e-101 >seq274 Length=57108 Score = 381 bits (422), Expect = 6e-101 Identities = 1110/1697 (65%), Gaps = 55/1697 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || || || || || ||||| || || ||| || ||| |||| |||||||||||| Sbjct 30233 GCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGTTTCCTG 30292 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| |||||| || || |||| ||||| |||||| | || ||| | Sbjct 30293 CTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGC 30352 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || |||||| | ||| || | || |||| | | Sbjct 30353 ATCTCCAAGTGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGCGCCACGAACAGC 30412 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || || | |||||||| || |||| ||||| |||||||||| Sbjct 30413 TACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAAT 30472 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| ||||| ||||||||||| || || | | | || || || ||||| |||| Sbjct 30473 GACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTAC 30532 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| |||||| | ||| | || ||||| ||||||||||||||| Sbjct 30533 CTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGCAAC 30592 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||||||||||||||||| ||||| || || || || ||||| Sbjct 30593 GAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAG 30652 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || || ||| | ||||| ||||| || |||||||| |||||||| | | Sbjct 30653 CGTGTGGAAGCGAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTAC 30712 Query 94372 GACGTTTGTGGATCG-CGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || | ||| || || || ||||| |||| | ||||| | |||| | Sbjct 30713 GA--GTGCTGGGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCG 30770 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | ||| || |||| | |||||||| ||| |||||| ||| | |||| Sbjct 30771 CGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGA 30830 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| ||| | ||| ||| ||||||| | | |||| |||||| ||||||||| ||| Sbjct 30831 CGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACC 30890 Query 94550 TCGGGGTGATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 |||| |||| ||||| || ||||| ||||||| | ||||| || || || | Sbjct 30891 TCGGCACGATC---CGCTCGAGCAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCG 30947 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| | || ||||| ||||||| || | ||| ||| || ||| |||| Sbjct 30948 ATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGGATG--G 31005 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT-- 94724 | || ||| | | ||| | ||| |||| | |||| |||| Sbjct 31006 AGTGTTCAACTAC----CAGAAGCTGTACGAG---GTGACC--------AAGG-TGGTGA 31049 Query 94725 -CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 | |||| |||||| ||| || ||| |||| ||||||||| ||||||| || | Sbjct 31050 CCCGGAACTTGAACAAGGTCATTGACGTCAACTACTACCCCGTGGAGGAGGCGCGCAAGT 31109 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || | || || |||||||||||| ||||||| || | | Sbjct 31110 CCAACATGCGCCACCGCCCGGTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTATCC 31169 Query 94844 TGATG-CGTCTGCCCTACGACTCTGTCGACGC-GGCGGGT---TTGAATTTGAACATATT 94898 | ||| | || | | ||| | ||| || || | || ||||||| || Sbjct 31170 TCATGAACTATG-CGTTCGA----GAGCCCGCAAGCCCGTGAACTCAACATGAACATCTT 31224 Query 94899 CGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGG 94958 ||| | || || |||| | ||| | || | | | |||| ||| || Sbjct 31225 CGAGACGATCTACTACGCTTCTATGGAGACCTCGATGGAGATCGCCA---AGGAGCTGGG 31281 Query 94959 GCCACACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCT 95017 || |||| |||||| |||||| ||| | | |||| || || ||||||||| | | Sbjct 31282 CCCGTACGAGACGTTCCAGGGATCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGACATGT 31340 Query 95018 GGGGTGTGA---AGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCA 95074 |||| || | | | ||||| ||| || |||| || || | | || |||| Sbjct 31341 GGGGCGTCACCCCGTCTTCGGGCTTGTGGGATTGGGCTGCGCTCAAGGAGAACGTGATCA 31400 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 | ||||| | ||| |||| || ||||| || |||||||| || || ||||| |||| Sbjct 31401 AGCACGGCATCCGCAACTCGCTCCTCGTGGCTCCGATGCCCACTGCGTCGACGGCTCAGA 31460 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 | | |||||||| ||||| |||| || | ||| || ||| |||||||| | || |||| Sbjct 31461 TTTTGGGCAACAATGAGTCCATCGAGCCGTACACGTCGAACATGTACAACCGCCGCGTGC 31520 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTG 95254 | || || || ||| | || | |||||| ||||| | ||| |||| ||||| Sbjct 31521 TGGCTGGTGAGTTCACGATCGTGAACAAGTACCTCATGAAGGAGCTGATCGAGCTGGGCA 31580 Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314 | ||| |||| ||||| | || | | |||||||| ||||| | Sbjct 31581 TCTGGACGCCTGAGGTGCGCAACCAGATTCTGGCTGACGGTGGCTCCGTGCAGAAGGT-- 31638 Query 95315 CGCAA---ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGC 95371 | || || ||||| | |||||| | |||||||| |||||||||||| |||| Sbjct 31639 -GAAATCCATTCCGGACCAGGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGA 31697 Query 95372 GCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNN 95431 | | | |||| |||| | ||| || ||| ||| |||||||| Sbjct 31698 AGGCCGTGTTGGACCTGTCGGCGGACCGTGGCGCCTACATTTGCCAGAGCCAGTCGCTGA 31757 Query 95432 NNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGA 95491 || ||||| || | | || | ||||||||| ||||||| |||| Sbjct 31758 ACATTCACATTGCCGACCCGACGATTAGCAAGCTGACGTCCATGCACTTCTACGCCTGGA 31817 Query 95492 GAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATAC 95551 ||||| |||||||| |||||||| || |||| | || || || ||| |||| | Sbjct 31818 AGAAGGGGCTCAAGACGGGTATGTACTACATGCGCGGACGCCCGAAAGCCGACGCCATCC 31877 Query 95552 AGTTCGCCCTAGAAAAG 95568 ||||| || | || ||| Sbjct 31878 AGTTCACCGTGGACAAG 31894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494694604999040