Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278135.1_202015-09-02] 4,624 sequences; 41,972,889 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq274 241 2e-58 seq3010 165 1e-35 seq60 98.7 1e-15 >seq274 Length=57108 Score = 241 bits (266), Expect = 2e-58 Identities = 1119/1752 (64%), Gaps = 72/1752 (4%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | || ||| Sbjct 31846 GTAGTACATACCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTT 31787 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | || || | ||| | ||||| ||| || ||| || || Sbjct 31786 GCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCC 31727 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || ||||||| || || | ||| ||||| |||||| |||||||| || |||| Sbjct 31726 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 31667 Query 115743 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATAGAGCCACCTGCCTTGAC 115799 | ||| | | || || || | ||| || || | |||||||| | | Sbjct 31666 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAG 31610 Query 115800 CATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTG 115859 || | | || || | ||||| || | || | || |||| || ||||| Sbjct 31609 AATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTA 31550 Query 115860 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTA 115919 ||| || || | |||||||| || || ||| | || ||||| | |||||| Sbjct 31549 CTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTA 31490 Query 115920 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 115979 ||||| | | |||||||||| ||||| || || || || || || |||||||| || || Sbjct 31489 CGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGC 31430 Query 115980 CATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC 116039 || ||| || |||||||| || | | | | |||||||| || |||| || Sbjct 31429 CACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATC 31370 Query 116040 GTAGTTGAGCTTTGTC----TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACG 116095 | | | | | | | | ||||||| || ||||||| |||||| | | | Sbjct 31369 CCACAAGCCCGAAGACGGGGTGACGC-CCCACATGTCGAACTGGAAGATACCCTTGCTGG 31311 Query 116096 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCC- 116154 | |||||||||| || ||||| || |||||| | |||| | || | || || Sbjct 31310 CAGGCGATCCCTGGAACGTCTCGTACGGGCCC---AGCTCC------TTGGCGATCTCCA 31260 Query 116155 TCGAGGGCT--------GCGTGATACATTGTCTCAAAAATGCGAGCATTCAT--TGCCTT 116204 |||||| || |||| || || ||||| || ||| ||||| || || Sbjct 31259 TCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATG------TTCATGTTGAGTT 31206 Query 116205 ---GGCCTCGTCGGAA-TCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCT 116259 || || | || || ||||| | | || | |||||| ||||||||||||| Sbjct 31205 CACGGGCTTGCGGGCTCTCGAACGC-ATAGTTCATGAGGATAAATGCATCCGCGAGACCC 31147 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 116319 ||||| || | |||| ||||| || | ||| || ||||| || || ||||||||| Sbjct 31146 TGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGG 31087 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || || || ||| | || | || ||| || ||||| || | || | Sbjct 31086 TAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTAC 31027 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 ||||| | ||| | || | || | || | ||| |||| || ||||| | ||| Sbjct 31026 AGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACAGAC 30973 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 ||||| || ||||| | |||||| |||||||| ||||| || ||||| Sbjct 30972 GCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAG 30913 Query 116500 TTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 || ||| || ||||| | ||||| || || ||||| ||| ||| ||| Sbjct 30912 TTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCC 30856 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACA 116616 ||||| ||||| | ||| |||||||| | || | | || || || ||| || Sbjct 30855 TTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CA 30798 Query 116617 TCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672 | || | |||| | | | ||| || |||||||||| ||||||||| ||| || Sbjct 30797 GCTGCTG--GGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTACAG 30740 Query 116673 GGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGA 116731 | ||| ||||| || ||| |||| ||| |||| || || |||| || || ||||| | Sbjct 30739 AGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAA 30681 Query 116732 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 | ||| | || | | || || ||||||||||| || || |||| ||| || || Sbjct 30680 GGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGT 30621 Query 116792 AGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 ||||||| || || || | || | || | || || || |||| ||||| || Sbjct 30620 AGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAAC 30562 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGA 116907 || | | || ||||||||||| |||||||| | |||| || || ||||| | Sbjct 30561 TCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCT 30502 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| ||||| | ||||| | || || || | ||||| || ||||| || Sbjct 30501 CCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCG 30442 Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027 | ||| || || || || || || || |||| | || | ||| || Sbjct 30441 TTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTG 30382 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 || |||||||| || |||||||| ||||| ||||||| | |||| || |||| || Sbjct 30381 ATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATG 30322 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || || |||||||| ||| | || | ||||| || ||||| || || | || Sbjct 30321 CCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGC 30262 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATC 117206 || || ||||| ||||| || || |||||||| | || | || | || ||||| || Sbjct 30261 GTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGCTC 30203 Query 117207 GTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266 || || | || | | | ||||||| | ||||||||| | | || ||||| | Sbjct 30202 ATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGAT 30143 Query 117267 CATGTATTGGGG 117278 ||| | ||||| Sbjct 30142 CATCTGCTGGGG 30131 >seq3010 Length=1496 Score = 165 bits (182), Expect = 1e-35 Identities = 367/538 (68%), Gaps = 11/538 (2%) Strand=Plus/Minus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 1267 CCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 1208 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCT 127337 || | ||||| | || || |||||||| ||| | | ||| ||| |||| | Sbjct 1207 ATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCA-CCCAGTGA 1149 Query 127338 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 127397 | | || || || || | ||| |||| ||||||| |||| | |||||||||| | Sbjct 1148 G-TACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGC 1090 Query 127398 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457 |||| || | ||||||| ||| | |||| | | |||||| ||||||| || | Sbjct 1089 CGATCAGCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCAC 1030 Query 127458 GTACGATGGCGTG-AATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGA-GTTC 127515 | ||||| ||||| | | || | ||| | | || || || | | | | Sbjct 1029 GCACGATCGCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGG 971 Query 127516 CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 ||| || || || ||| | |||||||| ||| |||||| || |||||||||| ||| Sbjct 970 CAC-GCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAG 912 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 ||| |||||||| || |||||||| | |||||| || | || || || || |||||||| Sbjct 911 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAA 852 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTAT 127694 || |||||||| |||||||| | |||||||| | |||| || || | | Sbjct 851 AATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGT 793 Query 127695 CAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || ||||||| | |||||| | ||||| ||||| | || |||| |||| ||| || Sbjct 792 CACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 735 >seq60 Length=176298 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 176783 AGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCG 176842 || |||||||| | || || || || || | || ||||| ||||| ||||||||| Sbjct 72565 AGCTGCGCCACAGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCG 72506 Query 176843 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 176902 || |||||||| |||||||| | |||||||| || || || | ||| || ||||||||| Sbjct 72505 TACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCC 72446 Query 176903 TCCGTCACGATGAGCGTACACT 176924 || |||| || |||| |||| Sbjct 72445 TCAGTCAAAATCAGCGAGCACT 72424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613471739283840