Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278135.1_202015-09-02] 4,624 sequences; 41,972,889 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq343 230 2e-55 >seq343 Length=44246 Score = 230 bits (254), Expect = 2e-55 Identities = 406/586 (69%), Gaps = 12/586 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || |||||||| ||||| || || |||| |||| ||||||| ||||||||||||||| Sbjct 16635 TTCCCGCTGCTCACGACCAAGCGCGTGTTCTGGCGCGGCGTGGCGGAGGAGCTGCTGTGG 16694 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGA---AGATCTGG 34336 ||| | || || | ||||| | | | ||| | | | || | | |||||| Sbjct 16695 TTCATTAGCGGCGACACGAGCGCGCACACGCT---GCAACAGAAGGACATTCACATCTGG 16751 Query 34337 GACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGC 34396 |||| | ||||| ||||| | | |||||| || || || | || || || | ||| Sbjct 16752 GACGGGAATGGGTCCCGAGAGTATTTGGACAGTCGAGGATTGCAGTCGCGCGAAGTGGGT 16811 Query 34397 GACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGC 34456 ||| | || || |||||||| ||||||||| | || ||||| || ||| || | Sbjct 16812 GACCTCGGACCTGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAGGTACACGGACATG 16871 Query 34457 GAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAA 34515 | ||||||| | |||||||| | ||||||||| || | | ||||| ||| || Sbjct 16872 CACACGGACTACACTGGACAGGGCGTGGACCAGCTTGCTG-AGGTGATTCACAAGCTGCG 16930 Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575 |||||| ||| | |||||||| ||| ||||||||||| ||||| Sbjct 16931 TACGAACCCGACGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGCTGATCTGAACGA 16990 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||||| || || |||||||||| |||||||||||||||| ||| | |||||| |||| Sbjct 16991 GATGGCACTGCCACCGTGCCACATGTTCTGCCAATTCTACGTGGCGGACGGGGAGTTGTC 17050 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 || ||| | || || || |||| |||||||| | || |||||||| |||||||| || Sbjct 17051 GTGTCAGATGTACCAGCGCTCGGCCGACATGGGTCTTGGTGTGCCGTTTAACATTGCAAG 17110 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||||| ||||| ||| | | || || || | |||||| ||||| || | | Sbjct 17111 CTACGCGCTGCTTACGCGTCTAGTGGCACAAGTGGCAGGGTTGAAACCTGGTGAATTTAT 17170 Query 34756 GCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 | |||| | || || |||||| | || ||||||||| | |||| Sbjct 17171 TC--ACGTTATCGGCGACGCGCATGTGTATCTGAACCACGTTGAGC 17214 Score = 230 bits (254), Expect = 2e-55 Identities = 406/586 (69%), Gaps = 12/586 (2%) Strand=Plus/Minus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGG 6603 |||| | ||||||||| || | |||||| || || | |||| | | | || ||||| Sbjct 17214 GCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGT--GAATAAATTCACCAGG 17157 Query 6604 AACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAA 6663 |||||| | || || || | | ||| ||||| ||||| || |||||||| || Sbjct 17156 TTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTAAA 17097 Query 6664 CGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT 6723 |||||| || | |||||||| |||| || || || | ||| || |||| |||||| | Sbjct 17096 CGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCGTC 17037 Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 ||| |||||||||||||||| |||||||||| || || |||||| ||||| Sbjct 17036 CGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCAGC 16977 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 ||||||||||| ||| |||||||| | ||| |||||| || ||| || Sbjct 16976 AGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGAAT 16917 Query 6844 CACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACT 6902 ||| | | || ||||||||| | |||||||| | ||||||| | | || ||| Sbjct 16916 CACCT-CAGCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTCCGTGTACC 16858 Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAG 6962 || ||||| || | ||||||||| |||||||| || || | ||| ||| | || || | Sbjct 16857 TGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCACTTCGCGCG 16798 Query 6963 ATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCT---TCA 7019 | | || || || |||||| | | ||||| ||||| | |||||||||| | | Sbjct 16797 ACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGATGTGAATGT 16738 Query 7020 CCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCT 7079 || | | | ||| | | | ||||| | || || | ||||||||||||||||| Sbjct 16737 CCTTCTGTTGC---AGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAGCTCCT 16681 Query 7080 CGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 | ||||||| |||| |||| || || ||||| |||||||| || Sbjct 16680 CCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAA 16635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448236490433280