Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278145.1_202015-09-02] 4,461 sequences; 41,753,045 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq70 125 6e-24 >seq70 Length=65085 Score = 125 bits (138), Expect = 6e-24 Identities = 191/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 || |||||| ||||| ||||| ||||| | |||| || || | ||||||| Sbjct 18027 ACACCCGTGCTGCCGAAGCCGCCGGCGCCGCGCGCCGTGTCCTCGATCTCATCCACCTCC 17968 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | ||| || ||| || | |||| || |||||||| | ||||| || ||| Sbjct 17967 TGCACCTCTGGGTACTCGATCTTCTCGAGAATAAGCTGCGCCACGCGGTCCCCGCGCTTA 17908 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 ||| ||| || | | |||| | |||||||| | ||||||||||||||||||||||| Sbjct 17907 ACCGAGAAGTCTTCG--GCCGCATGGTTGAACAAGATCACGCCCACGTTGCCGCGGTAGT 17850 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 ||||||| ||||| || ||||| ||||||||| | ||| | || || || || || | Sbjct 17849 CGGCGTCGATCACACCGGCGCCAGTGTCGATGAATTTCTTAAGTGCGAGCCCAGAACGCG 17790 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 | ||||| || |||| || ||| |||||| Sbjct 17789 GCGCCACACGCGCGTAACATCCAGCGGGAA 17760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430031018614232