Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278145.1_202015-09-02] 4,461 sequences; 41,753,045 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2996 414 2e-110 seq305 390 2e-103 >seq2996 Length=1496 Score = 414 bits (458), Expect = 2e-110 Identities = 614/862 (71%), Gaps = 9/862 (1%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | || ||| | ||| ||||||||||||||| || || |||||| || Sbjct 401 GATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGC 460 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| | ||||||| | ||| | | ||||| | ||| | || ||||| Sbjct 461 CGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAACCTGACGGACAACGAGCG 520 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| |||| || | || || |||||||| ||| |||||||| || || ||||| Sbjct 521 CCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAA 580 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||||| | | |||| || |||||||| || | ||||| |||||||||||||||| Sbjct 581 CCTGGCGATGAACTTCAGCAATGAGGTGCAAGTGCCG-GAGGCTCGCTGCTTCTACGGCT 639 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||||| ||||| |||||| | ||||| ||||||||| | ||| || ||||||||| Sbjct 640 TCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACA 699 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || ||| |||| ||| | | || | ||||| |||||||| || ||| | Sbjct 700 TCAAGGACGCCGTGGAGAAGGATCGCTTGCTGCGTGCCATCGAGACGATCCCGTGCGTGG 759 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 |||||||||| |||||||||||| ||| || || | | | | | ||| Sbjct 760 AGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTGTTTCGTCCTACCCGGAGC 819 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | ||| | || || ||||||| |||||||| ||||||||||| ||||| |||||||| Sbjct 820 GTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCT 879 Query 42763 TCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 ||||||||||| || || || ||||| || || | |||||||||||| ||||||||| Sbjct 880 TCTGGCTCAAGAAGCGCGGCCTC-ATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGC 938 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 |||||||||| |||| | |||||| || |||||| ||| ||||| | | | || Sbjct 939 CGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGA---AGTTGGTGAAC 995 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 |||| || || || || | || ||| | || || |||| ||| ||| | ||| Sbjct 996 AAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAG 1055 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 ||| | | | ||||| |||||| ||| ||||||||||| | ||||||||| || Sbjct 1056 TTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAG 1115 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCC-GCCTCTACAA 43060 |||||| ||| ||| ||||||| || |||| | ||||| || || ||||||| Sbjct 1116 TACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGT-GCATCCAAGATCTACAA 1174 Query 43061 CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 | | | ||| ||||||| ||||| | |||||| || |||||||||||||||| || Sbjct 1175 CGTGAAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTT 1234 Query 43121 CGAGAAGCGCGTCGCCGACTAC 43142 |||||||||||| | ||| ||| Sbjct 1235 CGAGAAGCGCGTGGGCGAGTAC 1256 >seq305 Length=58922 Score = 390 bits (432), Expect = 2e-103 Identities = 1414/2169 (65%), Gaps = 100/2169 (5%) Strand=Plus/Minus Query 243735 CCACGCTGAACTGGACGGGTGCGACGGCGGCCTTG-GTCCTC--AGGTAGTACATGCCGG 243791 ||||| ||||||||| || || |||| | | |||| | | ||||||||| || | Sbjct 31877 CCACGGTGAACTGGATGG---CGTCGGCTTTCGGGCGTCCGCGCATGTAGTACATACCCG 31821 Query 243792 TCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCT 243851 ||||||| || | |||||||| || |||||||| ||||||||| | ||| | Sbjct 31820 TCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTGCTAATCGTC---- 31765 Query 243852 TTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC- 243910 |||||| ||| | | | ||| || |||||||||||| | | ||| |||| Sbjct 31764 --GGGTCG-----GCAATGTGA-ATGTTCAGCGACTGGCTCTGGCAAATGTAGG-CGCCA 31714 Query 243911 CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATG 243970 || || || | || | | | | ||||||| ||||| || |||||||||| | Sbjct 31713 CGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 31654 Query 243971 GGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGC 244030 ||||| || || || | || | |||||||| ||||| || | | | | Sbjct 31653 TCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAGCCAGAATC 31594 Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC---CAGCGCCTCGACCAGGTGC 244087 ||| |||||| | | |||| | ||||| |||| |||| ||| | |||| | Sbjct 31593 TGGTTGCGCACCTCAGGCGTCCAGATGCCCA---GCTCGATCAGCTCCTTCATGAGGTAC 31537 Query 244088 CTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147 ||||||| | | ||||| || | |||||||||||| | ||| | ||| || | Sbjct 31536 TTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTAC 31477 Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||||||| ||| ||||||||| ||||| ||||| |||||| ||||| || | | Sbjct 31476 GGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCC 31417 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTCGTTCCAG 244264 || || || ||| | | ||||||| | ||| || || ||||| | ||| Sbjct 31416 ACGAGGAGCGAGTTGCGGATGCCGTGCTT---GATCACGTTCTCCTTGAGCGCAGCCCAA 31360 Query 244265 TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCC 244324 ||||||| |||||| || || | | || |||||||||||| ||||| | | ||| Sbjct 31359 TCCCACAAGCCCGA-AGA----CGGGGT-GACGCCCCACATGTCGAACTGGAAGATACCC 31306 Query 244325 TTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA-GGGACCGTCGCGCTGGGCCAGCT---T 244380 |||||| | || |||| | | ||| ||| ||| || | | || ||| | || | Sbjct 31305 TTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTC-CTTGGCGATCTCCAT 31247 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 || |||| | | ||||||||||| ||||||||||| || |||| | || || Sbjct 31246 CGAGGTCTCC---ATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACG 31190 Query 244441 GGCCTTGCCGCAGGTGAAGGGGAT-GCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 ||| |||| | | | | || | ||| | || || | || || || ||||| | Sbjct 31189 GGC-TTGCGGGCTCTCGAACGCATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGA 31131 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCACGGGGT 244556 |||| || || | || | ||| ||| ||||||| |||| || || |||||||| Sbjct 31130 CGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGC---GCCTCCTCCACGGGGT 31074 Query 244557 AAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCA 244616 | ||||| |||| || |||||||| | ||| ||||| | || | || ||| || Sbjct 31073 AGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACA 31014 Query 244617 GCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTG 244675 || ||| ||| | || | ||| |||||| ||||||| | | Sbjct 31013 GCTTCTGGTAGTTGAACAC-------TCC------------ATCCTCCACAAACTTGGGG 30973 Query 244676 AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATC 244735 ||||| || ||||||||||| || |||||||| || | ||||||| | |||| Sbjct 30972 AGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATC 30913 Query 244736 TCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG 244795 ||| ||| | ||| || | ||| ||||| |||| ||| || || |||||| |||| Sbjct 30912 TCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTG 30853 Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTG 244855 ||||||||||| |||||||| ||| | || ||||| | ||| ||| | |||| | | Sbjct 30852 GCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCG 30793 Query 244856 TTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTG 244915 ||| || | | || |||| |||| |||| || ||||| |||||| | Sbjct 30792 AACCACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCG 30733 Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCAC 244975 ||||| | |||||||||| ||||||| ||||| || |||||| | ||||| Sbjct 30732 TACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAG 30673 Query 244976 ATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 | || ||||||| |||| | | || | || |||||| || ||||||| ||| || Sbjct 30672 AAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGA 30613 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAA 245095 || | ||||||||| | | | ||| || ||| |||||| | |||||||| Sbjct 30612 GCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGG 30553 Query 245096 AAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTG 245155 || || || |||||| ||||||| ||||||| ||||| |||| | ||| |||||| Sbjct 30552 AACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTG 30493 Query 245156 TTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTAT 245214 |||||||||||||| | | || | | ||||||| | ||| | || | || Sbjct 30492 CCTCCTCCCTGGTCCACATAGCGGGCCGTG-TCATTGAAGACCCTCAGCATGGGGATGAT 30434 Query 245215 GCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGAT 245274 ||||| || ||||| ||||| ||||||| | | || | | || |||| || Sbjct 30433 CCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCAT 30374 Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 ||||| | || ||||| |||||||||| ||||| ||||| ||||| Sbjct 30373 ACTGATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTA 30314 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394 |||||||| || ||| || |||| ||||| || || || |||||||| || Sbjct 30313 AATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACG 30254 Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGA 245453 || ||| | ||| || || ||||| | ||||| |||||| | | || || | || Sbjct 30253 CGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAG-AACATCTGTGACATGA 30195 Query 245454 ACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTC 245512 | | ||||| || || || | ||||| | ||| || ||| || ||| | | Sbjct 30194 GCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGC-CACGCGC 30136 Query 245513 ATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTC-CCTTGAGCATGTAGGAGCG 245571 |||| | |||||||| ||| | | | || | || | || | |||| || Sbjct 30135 ATGATCATCTGCTGGGGGCGCTCCA-CGACCTTTCCGTTCACGCGGAAGAGGTAGCCCCG 30077 Query 245572 CTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGC 245631 ||| ||||||||||| || ||||| ||| ||||||| || ||| ||| ||| | Sbjct 30076 CTCAAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGCCGA 30017 Query 245632 GTCGAGTCTC-TCGGCGTGCTTC-TGACTGACCTCGTAAAACTTTTGCGCTATGAGGGGA 245689 || || ||| || ||||| | | || || | | || | | | || ||||| || Sbjct 30016 GTTAAG-CTCGTCCTTGTGCTCCATCAC-GAGCGCATACACGTCGTCGGCGATGAGCGGC 29959 Query 245690 GCC-CTGAGCCCG--GTGTCCGGATTGACGTTGAACCAGAGCCTC----TTGCACACCTC 245742 ||| | | ||||| | || | || ||| ||| |||| ||| ||| Sbjct 29958 GCCGCGGCGCCCGTCTTCTCGTGCGTGTTCTTGTGGAAGA-CCTCGATGTTG-TCAC--T 29903 Query 245743 CGAGAACTTGGGGCTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGCCGCCAACTT 245802 ||| ||| | | ||| ||| |||||||||| || || ||||||||||||| ||| Sbjct 29902 GAAGACCTT---GTTCGTGTTCTTGTGCAGGTTGGACACGGCGATGCGCGCCGCCAGCTT 29846 Query 245803 GCTGTAGTCGGGGTGAGTGGTGGTCATGTTGGAGGCCGTGTGGGCCAGCAGCTCGTCAAT 245862 | | |||| ||||| ||| || || | |||||| | ||| ||||||||| | Sbjct 29845 GGAGAAGTCTGGGTGCTGCGTGCTCTGGTACGCGGCCGTCTCGGCGGCCAGCTCGTCCAG 29786 Query 245863 CTCGGACGT 245871 ||||||||| Sbjct 29785 CTCGGACGT 29777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944286541285360