Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278145.1_202015-09-02] 4,461 sequences; 41,753,045 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq541 123 6e-23 seq305 98.7 2e-15 >seq541 Length=16745 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || |||||||| | || || | || || ||||||||||| || |||||||| Sbjct 12992 TTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 13051 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || ||||||||||| ||||| || ||||| |||||||| || ||| Sbjct 13052 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 13111 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| |||| || ||||| || || || | ||||| || |||| || || || || Sbjct 13112 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 13171 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 13172 ATCTGCAT 13179 >seq305 Length=58922 Score = 98.7 bits (108), Expect = 2e-15 Identities = 188/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 |||||||| | ||| ||||||| ||||||||| | ||| ||| || || | ||| Sbjct 30605 TTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCGAACGGCAAGTGG 30664 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 ||||||||||| |||||||| || || ||||| | || | || |||||||||| Sbjct 30665 AGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTACGAGTGCTGGGGCGACGAGTTCGAG 30724 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGC---CAAAAAGGTCGTGAAGGCCCAA 160765 ||||| || || | ||||| || ||||| | || ||| | | || || ||||| Sbjct 30725 ACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCGCGCGCAAGACGATC---AATGCCCAG 30781 Query 160766 GAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATAC 160825 | |||||| |||||| | ||| || | ||| ||| |||| || || ||| Sbjct 30782 CAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGACGGGCGTGCCGTTCATGCTGTAC 30841 Query 160826 AAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 ||||| || | |||||| |||||| ||||| Sbjct 30842 AAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAAC 30877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109418185845587