Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278145.1_202015-09-02] 4,461 sequences; 41,753,045 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq690 120 2e-22 >seq690 Length=12807 Score = 120 bits (132), Expect = 2e-22 Identities = 381/588 (65%), Gaps = 12/588 (2%) Strand=Plus/Minus Query 67628 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 67687 || || |||||||||||||| |||||| || || ||| | |||||| || | Sbjct 5449 CGAGTGGTGGAGATCTACGGCCCTGAGAGCTCTGGCAAGACGACGTTGGCACTGAGCTGC 5390 Query 67688 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 67744 | || | || || ||| ||| ||| | |||| |||||| || || || || Sbjct 5389 ATTGCGGAGGCTCAAAAGACCGAGGGCGGGGTGTGTGCCTTCATCGATGCTGAGCACGCT 5330 Query 67745 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 67804 | || | | |||||| ||| || || || || | ||| || || |||| Sbjct 5329 ATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 5270 Query 67805 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 67864 || ||| | || || | || ||||| |||| ||| ||| || ||||| | ||| Sbjct 5269 CCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGACACGCTCATCCGATCTGGAGCGGTG 5210 Query 67865 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 67924 | || | || ||||| ||||||||| || |||||||| || ||||| || || || Sbjct 5209 GACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTGCCGCGTGCCGAGCTTGAGGGCGAG 5150 Query 67925 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 67984 || || ||| ||| | | ||||| || || | ||| || || |||||||||| Sbjct 5149 ATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATTAATGAGCCAAGCTCTGCGCAAGCTC 5090 Query 67985 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 68044 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 5089 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATCCGCCAGAAG 5030 Query 68045 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 68104 | |||| | || ||| | |||| ||| | ||||| | || |||||| Sbjct 5029 GTGGGCATTAT---CTTCGGATCTCCTGAGGTCACGTCGGGTGGCACAGCGTTGCGCTAT 4973 Query 68105 TACGCCTCGGTGCGTATGGATGT---CCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 68161 ||||| || ||||| |||| | ||||| || || | | ||||||||||| || Sbjct 4972 TACGCGTCCGTGCGCCTGGACATTCGCCGCAAGACGGCTATC---AAGGAAGGCGACCAG 4916 Query 68162 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCG 68209 |||||||||| ||| ||||||||| | |||||||||||||||| Sbjct 4915 ATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAGAACAAGCTGGCG 4868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247436146551888