Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278145.1_202015-09-02] 4,461 sequences; 41,753,045 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq305 143 8e-29 >seq305 Length=58922 Score = 143 bits (158), Expect = 8e-29 Identities = 365/544 (67%), Gaps = 20/544 (4%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||| || || || ||| | | || ||||| || ||| ||||| || || || || || Sbjct 30430 CGGGATCATCCCCATGCTGAGGGTCTTCAATGACACGGCCCGCTATGTGGACCAGGGAGG 30489 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 ||||| ||| ||| ||||| ||||||||||||||||||||||||||||| || || Sbjct 30490 AGGCAAGCGCAAAGGCTCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGAC-GTGTTCG 30548 Query 255091 -GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACA 255149 ||| | |||| | | || ||||| |||| || ||| |||||| ||| | Sbjct 30549 AGTTCCTGGAGCTGCGCAAGAACCACGGCAACGAGCTGCACCGCGCGCGCGACCTCTTCT 30608 Query 255150 CCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAA-CGAGACGAGACCTGGAGC 255208 |||| | ||| | ||||||||| ||| || |||||| ||| ||| | |||||| Sbjct 30609 ACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCGA-ACGGCAAGTGGAGC 30667 Query 255209 CTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAA 255268 || | || ||||| | ||||| || ||| | ||||| |||||||| || | Sbjct 30668 CTTTTCTGCCCCAATGAGGCCCCCGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACT 30727 Query 255269 CTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCG---TACGCCAAGTGCCCGCGAAGAA 255324 ||||| | |||||||| | || || | || ||| | ||||| || | Sbjct 30728 CTGTACGAGAAGTACGAGAAGGAGGGGCGCGCGCGCAAGACGATCAATGCCC----AGCA 30783 Query 255325 GATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAA 255384 | | ||| | | || || | |||| | || || || |||||||| | || |||| Sbjct 30784 GCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGACGGGCGTGCCGTTCATGCTGTACAA 30843 Query 255385 AGAC-CACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCG---A 255440 ||| | || |||| ||||||||| | ||| ||| ||||| | ||||| | Sbjct 30844 GGACGCGGCCAACCGCA-AGTCGAACCAGCAGAACCTCGGCACGAT---CCGCTCGAGCA 30899 Query 255441 ACCTGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGG 255500 || ||||| |||||||| | | ||||||| | | |||||||| || |||||| ||| Sbjct 30900 ACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCGATGAGGTGGCGGTGTGCAACCTGG 30959 Query 255501 CGTC 255504 |||| Sbjct 30960 CGTC 30963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588245216174145