Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278145.1_202015-09-02] 4,461 sequences; 41,753,045 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq690 145 4e-30 >seq690 Length=12807 Score = 145 bits (160), Expect = 4e-30 Identities = 332/498 (67%), Gaps = 9/498 (2%) Strand=Plus/Minus Query 66242 TGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66301 ||||| |||||| ||||||||| | | || | | ||||||||||| || ||||| || Sbjct 5354 TGCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGA 5295 Query 66302 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66361 | | ||| || || ||||||||| | || || | || ||||| |||| || Sbjct 5294 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGA 5235 Query 66362 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66421 | ||| || ||||| | | || | |||| || | ||| ||||||||| || || Sbjct 5234 CACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGT 5175 Query 66422 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66481 |||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 5174 GCCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATT 5115 Query 66482 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGAC 66538 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 5114 AATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 5056 Query 66539 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGAC 66598 ||| | |||||| | ||| ||||| | |||| | || ||| | ||| Sbjct 5055 --TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGT 5001 Query 66599 CACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 66658 ||| |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 5000 CACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAA 4941 Query 66659 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66718 | | ||||||||||| || |||||||||| || |||||||| | ||| Sbjct 4940 GACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAA 4881 Query 66719 GAACAAGCTGGCCCCGCC 66736 |||||||||||| |||| Sbjct 4880 GAACAAGCTGGCGTCGCC 4863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240946899381300