Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278145.1_202015-09-02] 4,461 sequences; 41,753,045 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq541 109 5e-19 seq29 107 2e-18 seq286 100 2e-16 >seq541 Length=16745 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || ||||| | || || || |||| || ||||| ||||| || || || Sbjct 12992 TTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 13051 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | || || |||||| ||||||||| |||| | | | | Sbjct 13052 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 13110 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | ||| || ||||||||||| |||||| | || |||||||| || || ||||| Sbjct 13111 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 13170 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 13171 GATCTGCAT 13179 >seq29 Length=76534 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 19419 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 19478 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||||| || | || ||| ||||| Sbjct 19479 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 19538 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| || | ||| | | | | || | ||||||||||| |||||| | | Sbjct 19539 GATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCT 19597 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| ||| || || ||||| ||||| Sbjct 19598 TGCCCGTCAACGTCTTCACGAAGATCTGCAT 19628 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 19647 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 19706 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||||| || | || ||| ||||| Sbjct 19707 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 19766 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| || | ||| | | | | || | ||||||||||| |||||| | | Sbjct 19767 GATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCT 19825 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| ||| || || ||||| ||||| Sbjct 19826 TGCCCGTCAACGTCTTCACGAAGATCTGCAT 19856 >seq286 Length=48301 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 15795 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 15854 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || || ||||||||||| | || | || || |||||| Sbjct 15855 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 15914 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||||| || | ||| | | | || || || ||||||||||| ||||| | | Sbjct 15915 AATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCT 15973 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||||||| || || || ||||| |||||||| Sbjct 15974 TGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 16007 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 15567 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 15626 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || || ||||||||||| | || | || || |||||| Sbjct 15627 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 15686 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||||| || | ||| | | | || || || ||||||||||| ||||| | | Sbjct 15687 AATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCT 15745 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| || || |||||||| ||||| Sbjct 15746 TGCCCGTCAAAGTCTTCACAAAGATCTGCAT 15776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429522246276893