Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278145.1_202015-09-02] 4,461 sequences; 41,753,045 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq541 82.4 5e-11 >seq541 Length=16745 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| || || || || | | Sbjct 13179 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 13120 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| |||| | | || || ||||| ||||| ||||| | ||||| || || Sbjct 13119 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 13060 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| ||||| | ||||||||| Sbjct 13059 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGATTACAAC 13000 Query 23791 ATACAAAA 23798 || || || Sbjct 12999 ATCCAGAA 12992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337991222946188