Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278145.1_202015-09-02] 4,461 sequences; 41,753,045 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq372 181 8e-41 >seq372 Length=42384 Score = 181 bits (200), Expect = 8e-41 Identities = 441/662 (67%), Gaps = 11/662 (2%) Strand=Plus/Minus Query 27142 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 27201 || || || ||||| | ||| || || || ||||| || | ||| | ||| || || Sbjct 17060 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17001 Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 27261 |||| | ||| | || || |||| | ||| || || | |||||| || |||||| Sbjct 17000 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 16941 Query 27262 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA 27321 || || || || || |||||||| |||| | |||||| | ||||||||| | ||| || Sbjct 16940 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 16881 Query 27322 TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 || ||||| || || || | ||||||||| || || ||||| | || || Sbjct 16880 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCA 16821 Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGG 27438 |||||||| || ||| | ||| || | ||| ||||| | | | || | Sbjct 16820 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGA 16761 Query 27439 TCCACGGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGT 27497 ||| | ||| |||| ||||| ||| || | |||||| ||||||||| Sbjct 16760 ATCACCTCA----GCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTCCGT 16705 Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 |||| || || ||||| | ||| ||||| ||||| || ||||| ||||| ||| |||| Sbjct 16704 GTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCACTTC 16645 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 | || || || | |||||||| | |||| ||| || || |||||||||| | Sbjct 16644 GCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGATGTG 16585 Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 27677 | |||||| ||| | | | | ||| || || | ||||||||||||||| Sbjct 16584 AATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAGCTC 16525 Query 27678 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA-ACTGTCCCT-T 27734 |||| | ||| | ||| || || | |||||||||||| || ||||| || || || | Sbjct 16524 CTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTCTCTCT 16465 Query 27735 GAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTCC 27794 || | | ||| ||| | |||||||| ||||| || |||||||| | |||||| Sbjct 16464 CAGACTGAACCGCATCTGTGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTCTCC 16405 Query 27795 CC 27796 || Sbjct 16404 CC 16403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369487110470891