Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278145.1_202015-09-02] 4,461 sequences; 41,753,045 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq29 174 3e-38 seq286 152 1e-31 seq541 131 4e-25 seq115 113 9e-20 seq335 109 1e-18 >seq29 Length=76534 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | ||| || || |||||||||||||| Sbjct 19630 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19689 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 19690 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19749 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 19750 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 19808 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 19809 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19856 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | ||| || || |||||||||||||| Sbjct 19402 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19461 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 19462 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19521 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 19522 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 19580 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 19581 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19628 >seq286 Length=48301 Score = 152 bits (168), Expect = 1e-31 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 15778 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15837 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 15838 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 15897 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || || Sbjct 15898 ATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 15956 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||||||||| |||||||||||||| ||||| |||||||| || Sbjct 15957 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 16007 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 15549 ACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 15608 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 15609 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 15668 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || | Sbjct 15669 GATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCA 15727 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||||||||||| |||||||||||||| || || |||||||| Sbjct 15728 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 15776 >seq541 Length=16745 Score = 131 bits (144), Expect = 4e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || ||||||||||| || | ||||||||||| ||||| || || || ||||| |||||| Sbjct 12992 TTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 13051 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| |||||| || |||||||| ||||| || ||| || || | || Sbjct 13052 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 13110 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 13111 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 13170 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 13171 GATCTGCAT 13179 >seq115 Length=46045 Score = 113 bits (124), Expect = 9e-20 Identities = 413/638 (65%), Gaps = 29/638 (5%) Strand=Plus/Plus Query 316569 CTTCTTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTGGGTTCGTA 316628 || || |||||| | || || || || || || |||||||||| | | |||||| Sbjct 30744 CTGCTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGCGT---TTCGTA 30800 Query 316629 ATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATACAATCACACA 316688 || ||||| |||||||||| |||||||| ||||| ||||| || || || | | Sbjct 30801 GTGAATGATGTTGGTACAGACAGTGTCGAGGAACCCAGAGTCGTGCGACACCATGATGCT 30860 Query 316689 TGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGACACAGAAAG 316748 | ||| ||| | ||| |||| ||||||| || ||| ||| | Sbjct 30861 CGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCCAA 30920 Query 316749 ATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCGCGTGCGAG 316808 |||||| ||||| || ||||| || || | | || | | |||||| || || || || Sbjct 30921 ATGGTTCGTCGGCTCATCAAGGAGCAGGATGTCTGCCTTCTGCAGCATGGCACGAGCAAG 30980 Query 316809 AGCAAGCTTCATTTTCCACCCCCCGGAAAGAGTGTTAAT---CGGGGCAGATTGGCGCTC 316865 |||| ||||| ||||| || || ||||| || | | |||| || ||| Sbjct 30981 CTCAAGTTTCATCTTCCAACCACCCGAAAGGGTACCCACACCCTGGGCC---TGCATCTC 31037 Query 316866 AACATCAAAGCCAACTGATTCGAGAGTAG-ACACGATTTTTTCACGAGACCATGTGTTTT 316924 ||||| || | |||| || |||| | | || |||| | || || Sbjct 31038 CGGGGTGAAGCCCACGCTTCCGAGCGTGTCACAC-ACCTCGTCGCGAG-----GAGTGTT 31091 Query 316925 CTTTAACTTGGTCGTCATTGGCAA---TGAAGTCAACGATAGACGTGTTAGATTCGGATC 316981 ||| | |||| |||| | | ||||||| || | ||| | || ||||| Sbjct 31092 CTTCA----GGTCCTCATCCACCAGGATGAAGTCCACCACGGACAACTCAGCCTCGGAAG 31147 Query 316982 CGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTT-CGTC--GGGAACCCTT 317038 | | |||| |||||||| | |||| ||||| || || | ||||| || | Sbjct 31148 CCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGC---TCGGAGCGGCTGGGGAAGCCCT 31204 Query 317039 CCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGC 317098 | | ||||||||| || || | |||||| |||||||| ||| ||| |||||||||| Sbjct 31205 CGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCCGC 31264 Query 317099 AAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTAC 317158 | ||||| || || | || ||||| || |||| ||||||||| |||||| ||| Sbjct 31265 ACAGACCGTAACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGCAGAATCATAC 31324 Query 317159 CACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 |||| || || || ||||| || || | ||||||||| Sbjct 31325 CACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 31362 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| || | ||| ||| || Sbjct 30337 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAGG 30396 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 ||| ||| |||||||||||||||||||| ||||| || || | |||||| || ||| Sbjct 30397 TGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTGC 30456 Query 316282 TTCCAAAC 316289 ||||| || Sbjct 30457 TTCCACAC 30464 >seq335 Length=69397 Score = 109 bits (120), Expect = 1e-18 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | |||||| || || || ||||||||||| | Sbjct 34938 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGA 34997 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| || || || ||||| ||||||| ||| || |||||| Sbjct 34998 AAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCA 35052 Score = 86.0 bits (94), Expect = 1e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| ||||| || ||| || || | || || ||||||| | || || Sbjct 35123 TACCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTCAATGCTGTCCGACGGCTCCACG 35181 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 35182 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTTTC 35232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046679371985494