Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278155.1_202015-09-02] 4,608 sequences; 41,735,089 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq341 93.3 3e-14 >seq341 Length=44087 Score = 93.3 bits (102), Expect = 3e-14 Identities = 182/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 97003 AGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTC 97062 || |||||||| |||| || | ||||||||||||| | |||| |||| ||| ||| Sbjct 17107 AGCGTTGGGAATGGCCGCGGTGAACGCGTAAGCTGCTTTTGAAGAGGCTCAACGTGGTTC 17048 Query 97063 ACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACA 97122 | ||| | || || || || | | |||||||||||| ||||| || | | || Sbjct 17047 AGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCAGGTTTCAACCCTGCCACT 16988 Query 97123 TGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCC 97182 || || | | || || | || | ||||| ||||||||||| ||||| || || ||| Sbjct 16987 TGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTAAACGGCACACCAAGACCC 16928 Query 97183 ATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGA 97242 || || || || | || || | |||||| || | || || || ||| || || || Sbjct 16927 ATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCGTCCGCCACGTAGAATTGG 16868 Query 97243 CTCAATACATGACAGGGGGGCAACGCCAT 97271 | || | || || || |||| ||||| Sbjct 16867 CAGAACATGTGGCACGGTGGCAGTGCCAT 16839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346764524610560