Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278155.1_202015-09-02] 4,608 sequences; 41,735,089 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3014 178 2e-39 seq272 150 3e-31 seq341 114 2e-20 seq251 96.9 5e-15 >seq3014 Length=1496 Score = 178 bits (196), Expect = 2e-39 Identities = 600/916 (66%), Gaps = 50/916 (5%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || ||| | ||| | |||||||| ||||| |||| || || Sbjct 393 CTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTC 452 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | |||||| | || |||| || | |||| Sbjct 453 TGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAACC---TGACG 509 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| | || || |||| | | || ||||| || | | ||| || ||| Sbjct 510 GACAACGAGCGCCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATC 569 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TG 125233 || ||||| || ||| || ||| | ||| || | || |||| ||| || Sbjct 570 GTGAACGAGAACCTGGCGATGAACTTCAGCAATGAGGTGCAAGTGCCGGAGGC-TCGCTG 628 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| ||| || |||||| | |||||||| ||||||| ||||| Sbjct 629 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGAT 688 Query 125294 TGACATGTACATTCGCGAT-CCGCAACGTA--AACACATGCTCTTTAACGCAATCGACAC 125350 |||| |||||| || ||| | | | ||| |||| | || ||||| || Sbjct 689 CGACACGTACATCAAGGACGCCGTGGAGAAGGATCACTTGCTGCGT---GCCATCGAGAC 745 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | | |||| | || ||||| | |||| | | |||| || | | || Sbjct 746 GATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGAC--CCTCGTGTT 803 Query 125411 T--TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 | || ||| | || | ||| |||| ||||||||||| |||||||| ||||| |||||| Sbjct 804 TCGTCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGT 863 Query 125469 AGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 || ||| ||||||| ||||||||||||||||| |||||||| || |||| | Sbjct 864 TCCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTC 922 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC---CAT--TCTACT- 125581 |||||| | || || ||||||||| | ||| ||||| || | | | |||| Sbjct 923 GAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTC 982 Query 125582 ---GTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACAT 125638 ||| ||| | |||| | ||| || ||| || | | || Sbjct 983 GAAGTTGGTGAACAAGCTGCC--------GGAGAGCC-GCG-TGCACGCG--------AT 1024 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCA 125697 || || || ||| ||| || || ||||| | | ||| || || || || ||| Sbjct 1025 CGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGC- 1083 Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 |||| |||||||||| ||| |||||| ||||||| ||||| ||||| || || || | Sbjct 1084 TGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGC 1143 Query 125758 TGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 ||||| || || |||||| ||||||| ||||| || || || | ||| | Sbjct 1144 TGTACTCACTGGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATA 1203 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACG 125875 || || || |||| ||||||||||| ||||||||| || ||||||| | || | Sbjct 1204 TGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTACTCCAAGG 1263 Query 125876 CTACGGTGTCGGTGTC 125891 || ||||| |||||| Sbjct 1264 CT--GGTGTGGGTGTC 1277 >seq272 Length=47053 Score = 150 bits (166), Expect = 3e-31 Identities = 335/496 (68%), Gaps = 10/496 (2%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| ||||| |||| || |||||||| ||||| || || || | ||| ||||||| ||| Sbjct 21251 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAAC 21310 Query 96966 TCTGGCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTT 97024 ||| || | |||| | || | ||| | || || || || ||||| || ||| | Sbjct 21311 CACGGCAACGA-GCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCT 21369 Query 97025 GTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACC 97084 |||||||||||| || | | ||| | |||||||| | |||||| | | | || Sbjct 21370 GTTCATGAAGCGTGTGGAAGCGAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCCC 21429 Query 97085 CGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGA 97144 ||| || | ||| ||||||||||| ||||| ||| | |||| | |||||| | || Sbjct 21430 CGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGGA 21489 Query 97145 GGGCCG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTC 97203 ||| || || |||||| || |||| | | |||||| |||||| || || | Sbjct 21490 GGGGCGCGCGCGCAAGACGA-TCAATGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGC 21548 Query 97204 AGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACC 97263 || | ||||| || |||| ||| || |||||||| | | || ||||| |||| Sbjct 21549 AGATTGAGACGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACC 21608 Query 97264 AACGCCACTTGGGCACCATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTACG 97320 | | || | ||||| ||| |||| ||| ||||| || ||| | |||||| Sbjct 21609 AGCAGAACCTCGGCACGATC---CGCTCGAGCAACTTGTGCTGCGAGATTATGGAGTACA 21665 Query 97321 CCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAG 97380 | || || || ||| ||| || ||| ||||| || || || ||||||||||| | Sbjct 21666 CGTCGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGG 21725 Query 97381 AGGGTAAAGTGTTTAA 97396 ||| | |||||| || Sbjct 21726 AGGATGGAGTGTTCAA 21741 Score = 87.8 bits (96), Expect = 3e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | || | || || | || ||| | || Sbjct 22397 TACAAGACGGTGTGGGAGATCAAGCAGAAGGCCGTGTTGGACCTGTCGGCGGACCGTGGC 22456 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| |||||| || ||| | || | || ||||||| || || || Sbjct 22457 GCCTACATTTGCCAGAGCCAGTCGCTGAACATTCACATTGCCGACCCGACGATTAGCAAG 22516 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 |||| || || ||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct 22517 CTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCATGTACTA 22572 >seq341 Length=44087 Score = 114 bits (126), Expect = 2e-20 Identities = 279/415 (67%), Gaps = 6/415 (1%) Strand=Plus/Plus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 ||| ||| || || || || || ||||| ||||||||| | || | ||| ||| ||| Sbjct 16651 AAGTGGGTGACCTCGGACCTGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAGGTACA 16710 Query 70122 TAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGA 70179 ||| ||| | || ||||| | || ||||| || || || |||| || | ||| | Sbjct 16711 CGGACATGC-ACACGGACTACACTGGACAGGGCGTGGACCAGCTTGCTGAGG-TGATTCA 16768 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239 || || || || || || || | ||||||| ||| | ||||| ||||| || Sbjct 16769 CAAGCTGCGTACGAACCCGACGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGCTGA 16828 Query 70240 TTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATG 70298 | || || | |||||||| |||||||| ||| |||| || || || ||| | || | Sbjct 16829 TCTGAACGAGATGGCACTGCCACCGTGCCACATGTTCTGC-CAATTCTACGTGGCGGACG 16887 Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358 | | ||||| || ||||| ||| | ||||||||||| || ||||| || |||| Sbjct 16888 GGGAGTTGTCGTGTCAGATGTACCAGCGCTCGGCCGACATGGGTCTTGGTGTGCCGTTTA 16947 Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418 ||||||||||||| | || | |||| | | || || | | || ||||| | Sbjct 16948 ACATTGCAAGCTACGCGCTGCTTACGCGTCTAGTGGCACAAGTGGCAGGGTTGAAACCTG 17007 Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 || || | ||| || |||||||| || |||||| | || ||| | ||||| Sbjct 17008 GTGAATTTATTCACGTTATCGGCGACGCGCATGTGTATCTGAACCACGTTGAGCC 17062 >seq251 Length=29535 Score = 96.9 bits (106), Expect = 5e-15 Identities = 215/318 (68%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||||||||||||| ||||| || || |||||||| | ||||||| Sbjct 6474 GAAGCCGTGGGTCAGGTGGCCTCCACTGGGCAAGTCCAGACCCATGATGCGGTCGTGCGG 6533 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| ||||||||| ||||||||| || || || Sbjct 6534 GCGCAGCAGAGCCGTGTACACGGCGAAGTTGGCCGGGCTGCCCGAGTAAGGCTGCACGTT 6593 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCT-GAGACATCGCTGCTGTGCTAGCA 127621 || ||||| | | ||| | || | |||| | || || |||||||| || | Sbjct 6594 GACGCCCCACTTGTCCTCCTCCAGGCCGTACGCCGTCAAGGCA-CGCTGCTGGCACAGGA 6652 Query 127622 GTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTC 127679 ||||| ||||| | |||||| || || ||||| ||| ||| ||| ||||| Sbjct 6653 TCTCGATCTTGTCGATGACCTCGTTGCCGCCGTAGTAGCGCGCGTTC--GGCAGGCCCTC 6710 Query 127680 CGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTT 127739 | |||||||||| |||| ||||| | || ||| || || | | | || ||||| Sbjct 6711 GGCGTACTTGTTGGTGAGGCACGAGCCCAGGCAGTCCATGACGGCGCGCGACGTGAAGTT 6770 Query 127740 TTCCGATGCGATCAACTC 127757 ||||| ||||| | ||| Sbjct 6771 CTCCGAAGCGATGAGCTC 6788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741016514990080