Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278155.1_202015-09-02] 4,608 sequences; 41,735,089 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq341 107 2e-18 >seq341 Length=44087 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 ||||| ||||||||||| || || || | ||||||||| |||| | ||| |||| |||| Sbjct 16960 TAGCTTGCAATGTTAAACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGA 16901 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || || | ||| ||||| || || || ||||| || |||| ||| || || || || ||| Sbjct 16900 CACGACAACTCCCCGTCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCC 16841 Query 20396 ATCAACGACAAGTCCGCCGGGTTCCACGCACACA 20429 ||| || || || |||||||||||| ||| Sbjct 16840 ATCTCGTTCAGATCAGCAGGGTTCCACGCAGACA 16807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441347376926720