Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278155.1_202015-09-02] 4,608 sequences; 41,735,089 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq272 378 7e-100 >seq272 Length=47053 Score = 378 bits (418), Expect = 7e-100 Identities = 1109/1697 (65%), Gaps = 55/1697 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || || || || || ||||| || || ||| || ||| |||| |||||||||||| Sbjct 20960 GCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGTTTCCTG 21019 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| |||||| || || |||| ||||| |||||| | || ||| | Sbjct 21020 CTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGC 21079 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || |||||| | ||| || | || |||| | | Sbjct 21080 ATCTCCAAGTGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGCGCCACGAACAGC 21139 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || || | |||||||| || |||| ||||| |||||||||| Sbjct 21140 TACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAAT 21199 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| ||||| ||||||||||| || || | | | || || || ||||| |||| Sbjct 21200 GACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTAC 21259 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| |||||| | ||| | || ||||| ||||||||||||||| Sbjct 21260 CTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGCAAC 21319 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||||||||||||||||| ||||| || || || || ||||| Sbjct 21320 GAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAG 21379 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || || ||| | ||||| ||||| || |||||||| |||||||| | | Sbjct 21380 CGTGTGGAAGCGAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTAC 21439 Query 94372 GACGTTTGTGGATCG-CGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || | ||| || || || ||||| |||| | ||||| | |||| | Sbjct 21440 GA--GTGCTGGGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCG 21497 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | ||| || |||| | |||||||| ||| |||||| ||| | |||| Sbjct 21498 CGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGA 21557 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| ||| | ||| ||| ||||||| | | |||| |||||| ||||||||| ||| Sbjct 21558 CGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACC 21617 Query 94550 TCGGGGTGATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 |||| |||| ||||| || ||||| ||||||| | ||||| || || || | Sbjct 21618 TCGGCACGATC---CGCTCGAGCAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCG 21674 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| | || ||||| ||||||| || | ||| ||| || ||| |||| Sbjct 21675 ATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGGATG--G 21732 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT-- 94724 | || ||| | | ||| | ||| |||| | |||| |||| Sbjct 21733 AGTGTTCAACTAC----CAGAAGCTGTACGAG---GTGACC--------AAGG-TGGTGA 21776 Query 94725 -CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 | |||| |||||| ||| || ||| |||| ||||||||| ||||||| || | Sbjct 21777 CCCGGAACTTGAACAAGGTCATTGACGTCAACTACTACCCCGTGGAGGAGGCGCGCAAGT 21836 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || | || || |||||||||||| ||||||| || | | Sbjct 21837 CCAACATGCGCCACCGCCCGGTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTATCC 21896 Query 94844 TGATG-CGTCTGCCCTACGACTCTGTCGACGC-GGCGGGT---TTGAATTTGAACATATT 94898 | ||| | || | | ||| | ||| || || | || ||||||| || Sbjct 21897 TCATGAACTATG-CGTTCGA----GAGCCCGCAAGCCCGTGAACTCAACATGAACATCTT 21951 Query 94899 CGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGG 94958 ||| | || || |||| | ||| | || | | | |||| ||| || Sbjct 21952 CGAGACGATCTACTACGCTTCTATGGAGACCTCGATGGAGATCGCCA---AGGAGCTGGG 22008 Query 94959 GCCACACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCT 95017 || |||| |||||| |||||| ||| | | |||| || || ||||||||| | | Sbjct 22009 CCCGTACGAGACGTTCCAGGGATCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGACATGT 22067 Query 95018 GGGGTGTGA---AGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCA 95074 |||| || | | | ||||| ||| || |||| || || | | || |||| Sbjct 22068 GGGGCGTCACCCCGTCTTCGGGCTTGTGGGATTGGGCTGCGCTCAAGGAGAACGTGATCA 22127 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 | ||||| | ||| |||| || ||||| || |||||||| || || ||||| |||| Sbjct 22128 AGCACGGCATCCGCAACTCGCTCCTCGTGGCTCCGATGCCCACTGCGTCGACGGCTCAGA 22187 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 | | |||||||| ||||| |||| || | ||| || ||| |||||||| | || |||| Sbjct 22188 TTTTGGGCAACAATGAGTCCATCGAGCCGTACACGTCGAACATGTACAACCGCCGCGTGC 22247 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTG 95254 | || || || ||| | || | |||||| ||||| | ||| |||| ||||| Sbjct 22248 TGGCTGGTGAGTTCACGATCGTGAACAAGTACCTCATGAAGGAGCTGATCGAGCTGGGCA 22307 Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314 | ||| |||| ||||| | || | | |||||||| ||||| | Sbjct 22308 TCTGGACGCCTGAGGTGCGCAACCAGATTCTGGCTGACGGTGGCTCCGTGCAGAAGGT-- 22365 Query 95315 CGCAA---ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGC 95371 | || || ||||| | |||||| | |||||||| |||||||||||| |||| Sbjct 22366 -GAAATCCATTCCGGACCAGGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGA 22424 Query 95372 GCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNN 95431 | | | |||| |||| | ||| || ||| ||| |||||||| Sbjct 22425 AGGCCGTGTTGGACCTGTCGGCGGACCGTGGCGCCTACATTTGCCAGAGCCAGTCGCTGA 22484 Query 95432 NNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGA 95491 || ||||| || | | || | ||||||||| ||||||| |||| Sbjct 22485 ACATTCACATTGCCGACCCGACGATTAGCAAGCTGACGTCCATGCACTTCTACGCCTGGA 22544 Query 95492 GAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATAC 95551 ||||| |||||||| || ||||| || |||| | || || || ||| |||| | Sbjct 22545 AGAAGGGGCTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCCGACGCCATCC 22604 Query 95552 AGTTCGCCCTAGAAAAG 95568 ||||| || | || ||| Sbjct 22605 AGTTCACCGTGGACAAG 22621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494694703943680