Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278155.1_202015-09-02] 4,608 sequences; 41,735,089 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq272 179 4e-40 seq264 95.1 1e-14 seq41 95.1 1e-14 >seq272 Length=47053 Score = 179 bits (198), Expect = 4e-40 Identities = 569/869 (65%), Gaps = 25/869 (3%) Strand=Plus/Minus Query 147459 GGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTT 147517 ||| | ||||||||| ||||| || ||| ||| |||| || || |||||| || || | Sbjct 21709 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 21651 Query 147518 CGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGC 147577 || ||||| |||||| | || || | || ||||| || || || ||| Sbjct 21650 CGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 21591 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---A 147634 |||||| ||| | |||||| |||| |||| ||||| | |||| || | ||| | Sbjct 21590 CCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGA 21531 Query 147635 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 ||| ||| | ||| || | | || || ||| ||||| || |||||| || Sbjct 21530 ACCA---CAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCT 21474 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 |||||| ||| ||||||||||| |||| ||| || ||||| || || || | Sbjct 21473 CGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGC 21414 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | || |||| || ||| ||| | || || ||| |||||||| || ||||||| Sbjct 21413 AGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACA 21354 Query 147815 GCGCGTACATAAGATCGCGCGCTT--TGCAA-TCCTCGGCGCCCATGTTGCGTTTCAAAT 147871 | ||||| | || |||||||| |||| || | | || | ||||| || | Sbjct 21353 GAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCG---CAGCT 21297 Query 147872 TAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 || | | | | | | |||||||||||| || || | ||||| ||| | || ||||| Sbjct 21296 CCAGGAACTCGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTG 21238 Query 147931 CGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||| ||| |||||||| |||| ||| || ||| || || || | || |||||| Sbjct 21237 CGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGG 21178 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 | ||| | | | ||||| ||| ||| | |||| ||| || | | | Sbjct 21177 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 21118 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---T 148104 |||| | | |||||| || ||| | |||| || ||| ||||| | || | | Sbjct 21117 TGCATACTGATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGT 21059 Query 148105 GTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATT 148164 ||||| | ||||| || || ||||| | | | | |||| |||||||| ||| Sbjct 21058 GTCGT--AAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGC 21001 Query 148165 TGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGA 148224 |||||| | |||| || || || || ||||| ||||||||||||| || | || Sbjct 21000 TGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT 20941 Query 148225 CTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCG 148284 ||| | |||||| | | || | | |||||| | |||||| |||||||| Sbjct 20940 GACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCC 20881 Query 148285 ACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||||||| ||| ||||| || || || Sbjct 20880 ACGCGCATGATCATCTGCTGGGGGCGCTC 20852 >seq264 Length=48808 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 15787 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 15846 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | || || ||||| || || || || ||||| Sbjct 15847 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 15906 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 15907 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 15966 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || |||| ||| || | ||| |||||||| Sbjct 15967 GGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 16008 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 15559 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 15618 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | || || ||||| || || || || ||||| Sbjct 15619 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 15678 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 15679 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 15738 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || |||| ||| || | || ||||||||| Sbjct 15739 GGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 15781 >seq41 Length=72855 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | ||||| || || |||||||||||||||| || Sbjct 20319 ACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 20378 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 20379 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCC 20438 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||||| || |||| | || | | || | |||||||| || | Sbjct 20439 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAG 20498 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAG 132133 ||| | || || || |||| || || | ||| |||||||||| | |||| Sbjct 20499 CGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGATCTTTTAG 20550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||| || || |||||||||||||||| || || Sbjct 20098 CGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 20157 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| || || || || ||||| || || Sbjct 20158 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 20217 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || |||| | || | | || | |||||||| || | ||| | Sbjct 20218 TCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATG 20277 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||| || || | ||| ||||||||| Sbjct 20278 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 20313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476583747194880