Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278155.1_202015-09-02] 4,608 sequences; 41,735,089 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq341 84.2 1e-11 >seq341 Length=44087 Score = 84.2 bits (92), Expect = 1e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 1160 CGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCAGCGACATGGCACTTCACCCG 1219 ||||||| |||| | || || |||||| | ||| || | ||| |||||||| | ||| Sbjct 16794 CGCCGGATCGTGTTGTCTGCGTGGAACCCTGCTGATCTGAACGAGATGGCACTGCCACCG 16853 Query 1220 TGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGCAGGTCTACCAG 1279 |||||||| | | ||| | ||||| | ||||| | | ||| ||| | |||||| Sbjct 16854 TGCCACATGTTCTGCCAATTCTACGTGGCGGACGGGGAGTTGTCGTGTCAGATGTACCAG 16913 Query 1280 CGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCT 1335 ||| || |||||| || ||||||||||| || || || |||||||| || Sbjct 16914 CGCTCGGCCGACATGGGTCTTGGTGTGCCGTTTAACATTGCAAGCTACGCGCTGCT 16969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296114569271808