Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq23 161 8e-35 seq118 150 1e-31 seq500 118 8e-22 seq301 93.3 3e-14 >seq23 Length=76221 Score = 161 bits (178), Expect = 8e-35 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||||||| ||||||||| |||||||||||| |||| |||| |||| ||| Sbjct 19768 ACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 19827 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| |||||||| || | ||||||||||| Sbjct 19828 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 19887 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | | |||| | |||||| |||| || || |||||| Sbjct 19888 ATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATAGTCTTG 19947 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||||| |||||||| ||||| |||||||| Sbjct 19948 CCCGTCAACGTCTTCACGAAGATCTGCATGTT 19979 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||||||| ||||||||| |||||||||||| |||| |||| |||| ||| Sbjct 19540 ACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 19599 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| |||||||| || | ||||||||||| Sbjct 19600 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 19659 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| | |||||| |||| || || |||||| Sbjct 19660 ATTTTCTGCTTCACGTTGTCGATAGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTG 19719 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| |||||||| ||||| |||||| Sbjct 19720 CCCGTCAACGTCTTCACGAAGATCTGCATG 19749 >seq118 Length=44280 Score = 150 bits (166), Expect = 1e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| || Sbjct 11694 ACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCA 11753 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 11754 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 11813 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| ||| ||||||||| Sbjct 11814 ATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTG 11873 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||||| ||||||||||||||| ||||| ||| Sbjct 11874 CCCGTCAAAGTCTTCACAAAGATCTGCATCTTG 11906 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| || Sbjct 11466 ACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCA 11525 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 11526 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 11585 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| ||| ||||||||| Sbjct 11586 ATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTG 11645 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| ||||||||||||||| |||||| Sbjct 11646 CCCGTCAAAGTCTTCACAAAGATCTGCATG 11675 >seq500 Length=16590 Score = 118 bits (130), Expect = 8e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||| || || ||| |||| || || || || |||||||| | Sbjct 12835 CCTTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12894 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | || ||||||||| ||||| ||||| || Sbjct 12895 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 12954 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||||| |||||| |||| || || |||||||||||||| |||||||||| Sbjct 12955 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 13014 Query 45327 AGATTTGCATG-TTGCCT-CAATA 45348 |||| |||||| || ||| ||||| Sbjct 13015 AGATCTGCATGATTCCCTGCAATA 13038 >seq301 Length=77596 Score = 93.3 bits (102), Expect = 3e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||||||||||||||||||||||||||| || ||| |||| ||| Sbjct 34941 ACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCC 35000 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || || |||||||| |||| ||||| ||||| || || Sbjct 35001 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGG 35041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395053513334584