Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq268 311 8e-80 seq2977 206 2e-48 seq118 154 1e-32 seq23 132 4e-26 seq500 127 2e-24 >seq268 Length=47326 Score = 311 bits (344), Expect = 8e-80 Identities = 993/1525 (65%), Gaps = 31/1525 (2%) Strand=Plus/Minus Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 ||||| || | || |||||||| | ||| ||||| || ||| |||| |||| || ||| Sbjct 22509 AACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCA 22450 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| |||| |||||||| ||||| || || |||||||| |||| || |||||||| Sbjct 22449 TTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTG 22390 Query 22586 CTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACA-GATCG--GAC 22642 | | ||||||||| | || ||||||| | ||| ||||||| | || ||| Sbjct 22389 CGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATCCCACAAGCCCGAAGAC 22330 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 || || || | ||||||| ||| | || || | || || || || || | | Sbjct 22329 GGGGTGAC---GCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGG 22273 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGC-CTCCAACGCGCCGTA 22761 |||| |||||||| || | ||| | || || | | ||||| | |||| Sbjct 22272 AACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CATCGAGGTCTCCATAGAAGCGTA 22214 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG-GCGACGCTTTCGTACGGCA 22820 || || ||||||||||| ||| |||| | ||| ||| ||| ||| ||| ||| || Sbjct 22213 GTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTGCGG-GCTCTCGAACG-CA 22156 Query 22821 TACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 || ||| | | || || ||||| | |||||| ||||| ||||| | ||| |||| Sbjct 22155 TAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGG 22096 Query 22880 TTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTC 22939 || || ||| ||||| || || || | || || || ||||| Sbjct 22095 CGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTC 22036 Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT 22999 ||||| | |||||| | || || | | ||| | | || || || Sbjct 22035 AAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAACACTCC--AT 21978 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | || |||||||| || ||| | || || || ||||| || |||||||| || Sbjct 21977 CCTCCA-CAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGC 21919 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 ||||||||||| | ||| ||| || | ||||| | |||||||| | || | Sbjct 21918 GACGTGTACTCCATAATCTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGC 21859 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 ||||| || || ||| || |||||||| |||||| ||||| ||||||||| | | Sbjct 21858 TGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATC 21799 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACACGTCGCACGTACCTGCC 23238 |||| || | ||| || ||||| ||| || | || | | || || | || Sbjct 21798 TGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCC 21739 Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC 23298 | |||| |||||||| | ||||| | || || ||| | || | || ||| || || Sbjct 21738 TCCTTC-TCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCC 21680 Query 23299 GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358 ||| | | | || || | || |||||| | || ||| || || |||| || Sbjct 21679 GGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAA 21620 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 ||||| || | ||| ||||||||||| || ||||| ||||| | ||| |||||| Sbjct 21619 CAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTG 21560 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 |||||| || |||| || || |||||||| || ||||||||||| ||||| | ||| Sbjct 21559 GTTCTTGCGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGC 21500 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 |||| ||| | ||| || ||||| || || || |||||||||| ||| | || Sbjct 21499 GAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGAC 21440 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTT 23598 || ||||| || | || |||||||| | ||| | || ||| | | | || | Sbjct 21439 CCTCAGCATGGGGATGATCCCGTTGGATGATCCG--TTCG--TGCCGCGGATGTAGCTGT 21384 Query 23599 T----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 | || || | |||||| | || || || |||||| || | || || || || Sbjct 21383 TCGTGGCGCGGATGTTGTGCATACTGATGCCAATACCTCCGGCCCACTTGGAGATGCACG 21324 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGA 23714 |||| || || || |||||||| |||||||| || ||| || | | || | || || Sbjct 21323 CGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGA 21264 Query 23715 AACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCG 23774 ||||||| |||| |||| ||||| |||| || || || || | ||||||| Sbjct 21263 AACACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCG 21204 Query 23775 TAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGT 23834 ||||| | | ||||| || | ||||||| | || || | ||||| | || Sbjct 21203 TAAAGAACATCTGTGACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGT 21144 Query 23835 GTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGT 23891 | ||||| | || |||||||| ||||| | || || | || ||||| | |||| Sbjct 21143 GAATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTT---TCCGT 21087 Query 23892 TAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGT 23951 | | ||| || || || | | ||| || || || || ||||| || | ||||| Sbjct 21086 TCACGCGGAAGAGGTAGCCCCGCTCAAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGT 21027 Query 23952 CACGATCGTGCACTATGGCCGAATT 23976 | || ||||| | |||||||| || Sbjct 21026 CCCGGTCGTGGATGATGGCCGAGTT 21002 >seq2977 Length=1496 Score = 206 bits (228), Expect = 2e-48 Identities = 562/842 (67%), Gaps = 30/842 (4%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 414 GACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGAC 473 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||| | || |||| || |||| ||| | || ||| | | || || || Sbjct 474 CTGGTGCACGACCTGAAGGACTGGGGGAACCTGACGGACAACGAGCGCCACTTCATCAAG 533 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || ||||| || ||| || || || |||||||| ||| ||| || Sbjct 534 CACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGG-CGAT-GA 591 Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| ||| || ||||||||| ||||||| | ||||| ||||| || || | |||| Sbjct 592 ACTTCAGCAATGAGGTGCAAGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCA 651 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || |||| ||||| || ||||| |||||| | |||||| || Sbjct 652 TCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCG 711 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCA 57923 ||||| | | || | || ||||| || || || ||| | | |||||||| Sbjct 712 TGGAGAAGGATCGCTTGCTGCGTGCCATCGAGACGATCCCGTGCG-TGGAGAAGAAGGCC 770 Query 57924 GAGTGGTCAATCAAATGGATAAAAA---GCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 ||| | |||| ||| | | | || || | | | ||| | || | Sbjct 771 CGCTGGGCGCTCAAGTGGTGTGACCCTCGTGTTTCGTCC---TACCCGGAGCGTCTGCTG 827 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGAT 58039 |||||||||||||| || || || ||||| ||||| ||| ||| | || || ||| | Sbjct 828 GCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGC-TCCATCTTCTGGCT 886 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| |||||||| ||||| || |||| || |||||| | || || ||||| Sbjct 887 CAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGA 946 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCG 58159 ||| | || || || || |||||||| |||||||| | | || || || | || Sbjct 947 GGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGAAGTTGGTGAACAA---GCTGCC 1003 Query 58160 GGATCGCATCTTGGAC---ATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 ||| || | || || || | || || || | ||| || | ||||| || | Sbjct 1004 GGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAG 1063 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 ||| | || || |||| || |||| |||||| || | |||| ||||||| || Sbjct 1064 CGACTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGA 1123 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTC----AT-TACAACACG 58331 ||| || |||||| | | |||| | ||| | ||| | || || || |||||| | Sbjct 1124 GTTCGTGGCCGACCGCC---TGCT-GTACTCACTGG-GTGCATCCAAGATCTACAACGTG 1178 Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAA 58391 || || ||||| || | ||| || |||||||||| |||||||||| ||||| ||||| Sbjct 1179 AAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAG 1238 Query 58392 AA 58393 || Sbjct 1239 AA 1240 >seq118 Length=44280 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||| |||| ||||| ||||||||| | ||||| || ||||| Sbjct 11675 CATGCAGATCTTTGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTC 11616 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | || || |||| ||| ||||||||||||| | ||||| ||||| Sbjct 11615 GGACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCA 11556 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||||||||| ||| | |||||| || ||||||| || || Sbjct 11555 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAA 11496 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || || ||||| || | ||| | ||||||| Sbjct 11495 CATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGTA 11446 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || |||||| |||| ||||| ||||||||| | ||||| || ||| Sbjct 11905 AAGATGCAGATCTTTGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCG 11846 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| ||| ||||||||||||| | ||||| ||| Sbjct 11845 TCGGACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGAC 11786 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||||||||| ||| | |||||| || ||||||| || Sbjct 11785 CAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTAC 11726 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || || || ||||| || | ||| | ||||| Sbjct 11725 AACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 11676 >seq23 Length=76221 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || ||||| | ||||| || || || Sbjct 19749 CATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTC 19690 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | || || |||| ||| |||||||| ||| | ||||||||||| Sbjct 19689 GGACTCTATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCA 19630 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| |||| ||| | || ||||||| || || Sbjct 19629 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 19570 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || |||| || Sbjct 19569 CATCCAGAAGGAGTCTACGCTGCACTTGGTGCT 19537 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| |||| ||||| || ||||| | ||||| || || Sbjct 19979 AACATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACTATCACGCTGGACGTGGAGCCT 19920 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| ||| |||||||| ||| | ||||||||| Sbjct 19919 TCGGACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGAC 19860 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| ||| | || ||||||| || Sbjct 19859 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 19800 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || |||| || Sbjct 19799 AACATCCAGAAGGAGTCTACGCTGCACTTGGTGCT 19765 >seq500 Length=16590 Score = 127 bits (140), Expect = 2e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| | ||||| || || Sbjct 13028 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCC 12969 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||||| | || | ||||| |||| ||| ||||||||||||| | ||||| || Sbjct 12968 GTCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGA 12909 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||| ||||| ||| | || ||| Sbjct 12908 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 12869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445741303351680