Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq200 122 6e-23 >seq200 Length=44161 Score = 122 bits (134), Expect = 6e-23 Identities = 359/548 (66%), Gaps = 13/548 (2%) Strand=Plus/Minus Query 25425 AGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCC 25484 || || || ||||| | ||| || || || ||||| || | | ||| | ||| || || Sbjct 17283 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17224 Query 25485 GGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTA 25544 |||| | ||| | || | |||| | ||| || || |||||| || |||||| Sbjct 17223 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 17164 Query 25545 AAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC 25604 || || || || | |||||||| || || | |||||| | ||||||||| | ||| | Sbjct 17163 AACGGCACACCAAGACCCATGTCGGCC-GAGCGCTGGTACATCTGACACGACAACTCCCC 17105 Query 25605 GTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTC 25664 ||| |||||| || || || | ||| |||||| || || || || | || || Sbjct 17104 GTCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATC 17045 Query 25665 TTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT-GTCC----CTGATA 25719 ||||||||| || ||| | ||| | | ||| ||||| || | || | Sbjct 17044 AGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTG 16985 Query 25720 AGATCCGCGGTGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTC 25778 | ||| | | ||| |||| ||||| ||| || | |||||| | |||||| Sbjct 16984 A-ATCACC-----TCAGCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTC 16931 Query 25779 CGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATC 25838 ||||||| || || |||| | ||||||||| ||||| || ||||| ||||| || | Sbjct 16930 CGTGTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCAC 16871 Query 25839 TTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGAT 25898 ||| | || || || | | |||||| | |||| ||| ||||| |||||||||| Sbjct 16870 TTCGCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGAT 16811 Query 25899 CTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAG 25958 | | |||||| ||| | | | | ||| || || | |||||||||||| Sbjct 16810 GTGAATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAG 16751 Query 25959 CTCCGCCG 25966 |||| ||| Sbjct 16750 CTCCTCCG 16743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340118928996792