Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq23 116 3e-21 seq118 104 2e-17 seq500 89.7 5e-13 >seq23 Length=76221 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| ||||| ||||| || | ||| || ||||||| ||| Sbjct 19534 CGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 19593 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||| || || || || || || ||| Sbjct 19594 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 19653 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||| ||| | ||| || ||| | | || ||||| | ||||||| Sbjct 19654 TCTTGGATTTTCTGCTTCACGTTGTCGATAGAGTCCGAAGGCTCCACGTCCAGCGTGATG 19713 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | || ||||| ||||||||||||| Sbjct 19714 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGC 19750 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| ||||| ||||| || | ||| || ||||||| ||| Sbjct 19762 CGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 19821 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||| || || || || || || ||| Sbjct 19822 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 19881 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||| ||| | ||| | ||| | | || ||||| | |||||| Sbjct 19882 TCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATA 19941 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || | || ||||| |||||||||||| Sbjct 19942 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19977 >seq118 Length=44280 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||||| ||||| || | ||| || ||||||| ||| | Sbjct 11460 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 11519 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || | || || | | ||||| || || || || ||||| ||| Sbjct 11520 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 11579 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||| ||| | ||| | ||| | | || ||||| | ||||| Sbjct 11580 TCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATC 11639 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | ||| ||||||||||||||||||| Sbjct 11640 GTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATGC 11676 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||||| ||||| || | ||| || ||||||| ||| | Sbjct 11688 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 11747 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || | || || | | ||||| || || || || ||||| ||| Sbjct 11748 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 11807 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||| ||| | ||| | ||| | | || ||||| | ||||| Sbjct 11808 TCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATC 11867 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| ||||||||||||||||| Sbjct 11868 GTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11902 >seq500 Length=16590 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || || ||||| ||||| ||| Sbjct 12870 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTG 12929 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||| | | | |||| | | || ||||| | ||||||| Sbjct 12930 TCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATG 12989 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || |||||||||||||||||| || Sbjct 12990 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGATT 13028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448265961205440