Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq104 168 1e-37 seq390 141 1e-29 >seq104 Length=133884 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 133345 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 133286 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || || |||||| ||||||| | |||| || |||| Sbjct 133285 CCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCTGGCCTCATCTACGAGGAGAC 133226 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| |||||||| ||| |||||||| || | || ||| || || Sbjct 133225 GCGTGGTGTGCTCAAGGTCTTCCTCGAGAACGTTATCCGCGACTCGGTCACCTACACGGA 133166 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || ||||||| |||| || || | || ||||| || Sbjct 133165 GCACGCTCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGTCAGGG 133106 Query 16672 CCG 16674 ||| Sbjct 133105 CCG 133103 >seq390 Length=28634 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 28550 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 28491 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || || |||||| |||| || | ||||||| |||| Sbjct 28490 CCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTATGAGGAGAC 28431 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || | | || || || Sbjct 28430 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACTCGGTGACGTACACGGA 28371 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || ||||||| |||| || || | || ||||| || Sbjct 28370 GCACGCTCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGGG 28311 Query 16672 CCG 16674 ||| Sbjct 28310 CCG 28308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071081961272