Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq268 244 1e-59 seq23 145 7e-30 seq118 123 2e-23 seq500 107 2e-18 seq301 96.9 3e-15 >seq268 Length=47326 Score = 244 bits (270), Expect = 1e-59 Identities = 952/1469 (65%), Gaps = 38/1469 (3%) Strand=Plus/Minus Query 145030 CTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACG 145089 || ||||| || | || | ||||| || |||| | ||||| || |||| ||| || Sbjct 22549 CTCGATCAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCG 22490 Query 145090 ACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGC 145149 || |||| ||| |||||| | || || | ||||| || ||||||| || ||||| Sbjct 22489 GCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGC 22430 Query 145150 GGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGAT 145209 |||| || |||||||| ||||| | | || ||||| | ||||||||| | | Sbjct 22429 CGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCAC 22370 Query 145210 GTCTTCCTTTAGCGTACCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTC 145266 || ||||| |||| | |||||||||| | ||||| ||| | ||| |||||||||| Sbjct 22369 GTTCTCCTTGAGCGCAGCCCAATCCCACAAGCCCGAAGACGGGGTGACGCCCCACATGTC 22310 Query 145267 GTACTGCAAAATGCCCTCGCTGGC-GGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAG 145325 | |||| || || |||| |||||| || | | ||| ||| | || || | |||| Sbjct 22309 GAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACG--TCTCGTACGGGCCCAGC 22252 Query 145326 T-TTTGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTG 145383 | ||||||| ||| || | | ||||| || || | || || |||||| || | Sbjct 22251 TCCTTGGCGATCTC-CATCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 22193 Query 145384 CCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCAT-GCGCAGCAGTACAAAAGCAT 145442 | ||||||| |||| ||||||| || |||| | || || | ||| |||| Sbjct 22192 CATGTTGAGTTCACGGGCTTGCGGGCTCTCGAAC-GCATAGTTCATGAGGATAAATGCAT 22134 Query 145443 CGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCG 145502 | ||||| ||||| | || | || | || || || ||||||| | | | |||| Sbjct 22133 CCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCT 22074 Query 145503 ACTCGATAGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTT 145561 ||| | || || | | | || ||| || | || |||||||| || || ||||| Sbjct 22073 CCTCCACGGGGTAGTAGTTGAC-GTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTG 22015 Query 145562 GTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTG 145621 || | | || ||| | ||| ||| ||| || | ||||| | | | Sbjct 22014 GTCACCTCGTACAGCTTCTGGTAGTTGAAC----ACTC--CATCCTCCACAAACTTGGGG 21961 Query 145622 ACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGAT 145680 | ||| | ||||||| || || || ||| ||| || |||| || |||| | | || Sbjct 21960 AGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAAT 21902 Query 145681 CTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT 145740 |||| |||||| ||||| | ||| || || || || ||||| || || | ||| Sbjct 21901 CTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTT 21842 Query 145741 GCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--A 145798 | |||||||||||| |||||| |||| |||| ||||| | ||||| |||| ||| Sbjct 21841 GGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGC 21782 Query 145799 AAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTC 145858 ||| || | ||| ||| | | || | ||| ||||| | ||||| ||| Sbjct 21781 GAAC--CACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTC 21724 Query 145859 CTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGA 145918 ||| || ||| ||| || || |||| ||| | || ||||| || ||||| Sbjct 21723 TCGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGG 21664 Query 145919 CACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCAC 145978 || | || ||| |||||| || | || |||| ||| |||| ||| || |||||| Sbjct 21663 CAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCAC 21604 Query 145979 AGCGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAA 146034 || ||||| | | || ||||||| |||| ||| | || || ||| || || Sbjct 21603 AGAGCGTAGAAGAGGTCGCGCGCGCGGTGCA--GCTC-GTTGCCGTGGTTCTTGC-GCAG 21548 Query 146035 ATTAAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTT 146093 | || | ||| | | ||| ||||||||||| || | |||| ||||| | |||| Sbjct 21547 CTCCAGGA-ACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTT 21489 Query 146094 TTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGG 146150 | || ||| || ||||||||||| | || || ||| || ||||| | || ||||| Sbjct 21488 TGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGG 21429 Query 146151 GCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGC 146210 | || ||| ||| | |||||||| | || | || || ||| | | Sbjct 21428 GGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGT 21369 Query 146211 AATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCG 146270 || | | | | ||| | ||| ||| | ||||||| || ||||| | ||||| Sbjct 21368 TGTGCATACTGATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCG 21309 Query 146271 TCTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCT 146330 | ||||| ||||| ||||| ||| | ||| | ||||| || ||||| ||| || Sbjct 21308 TGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCT 21249 Query 146331 GCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGC 146390 ||| |||||| || || || | ||| || ||||||||||||| | | | Sbjct 21248 GCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTG 21189 Query 146391 TCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGA 146450 ||| | | |||||| | | || | || ||||| | ||||| |||| || | Sbjct 21188 ACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCA 21129 Query 146451 CGCGCATGAGCATGTGTTGGGGCCGCTCC 146479 ||||||||| ||| || ||||| |||||| Sbjct 21128 CGCGCATGATCATCTGCTGGGGGCGCTCC 21100 >seq23 Length=76221 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| || || | || |||||||| || |||||||| |||||| Sbjct 19522 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19581 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 19582 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19641 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||||||||| | | || | || || | | ||| | | Sbjct 19642 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATAGAGTCCGAAGGCTCCACG 19701 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || | || || ||||| ||||||||| Sbjct 19702 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19749 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| || || | || |||||||| || |||||||| ||||| Sbjct 19749 GCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 19808 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 19809 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 19868 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| |||||||||||| | | || | | || | | ||| | Sbjct 19869 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 19928 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | || | || || || || | || || ||||| ||||||||| Sbjct 19929 GTCCAGCGTGATAGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19977 >seq118 Length=44280 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| |||||| Sbjct 11448 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11507 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || ||||||||||| ||| | || | ||||||||||| || ||| Sbjct 11508 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 11567 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||||||||| | | || | | || | | ||| | | Sbjct 11568 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 11627 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || || || | ||| || || || ||||||||| Sbjct 11628 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 11675 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||||||| | || | || |||||||| || |||||||| ||||| Sbjct 11675 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 11734 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||| || ||||||||||| ||| | || | ||||||||||| || || Sbjct 11735 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 11794 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||||||||||| | | || | | || | | ||| | Sbjct 11795 GATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 11854 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | ||| | || || || || | ||| || || || |||||||| Sbjct 11855 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11902 >seq500 Length=16590 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || ||||||||||| | ||||| |||||| ||||||||||| ||| ||| Sbjct 12835 CCTTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12894 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || || || ||||| ||||| |||||||||||||| | | Sbjct 12895 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 12954 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 12955 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 13014 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 13015 AGATCTGCATGA 13026 >seq301 Length=77596 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| ||||||||||| || Sbjct 34923 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 34982 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 34983 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGG 35042 Query 131128 ATTCCT 131133 |||||| Sbjct 35043 ATTCCT 35048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471986225679360