Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq500 109 5e-19 seq23 100 2e-16 seq268 87.8 2e-12 >seq500 Length=16590 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || ||||| | || Sbjct 13024 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 12965 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | ||| || |||| || ||||| || |||||||| || ||||| || || || Sbjct 12964 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 12905 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| |||| ||||||||| Sbjct 12904 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGATTACAAC 12845 Query 22399 ATTCAAAA 22406 || || || Sbjct 12844 ATCCAGAA 12837 >seq23 Length=76221 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || || || || || || |||| || || ||||| | Sbjct 19979 AACATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACTATCACGCTGGACGTGGAGCCT 19920 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| | | || || ||||| |||||||||||||| || || ||||| Sbjct 19919 TCGGACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGAC 19860 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | ||||| ||||| | ||| ||| Sbjct 19859 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 19800 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || || | || || || |||| |||| || || Sbjct 19799 AACATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 19750 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || ||||| | | Sbjct 19748 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 19689 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || ||||| |||||||||||||| || || ||||| || Sbjct 19688 GACTCTATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 19629 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||| | ||| |||||| Sbjct 19628 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 19569 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || |||| | ||||| || Sbjct 19568 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTTCGCGGCGG 19522 >seq268 Length=47326 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/295 (67%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 128980 TTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTC 129039 || || ||||||||||| ||||| ||| | || || | || || || | ||| Sbjct 22668 TTGATCTCCCACACCGTCTTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTC 22609 Query 129040 TGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTACAAAT--TCA 129097 |||||| ||| || || | ||| | ||| |||| | | | || || || || Sbjct 22608 TGCACGGAGCCACCGTCAGCCAGAATCTGGTTGCGCACC--TCAGGCGTCCAGATGCCCA 22551 Query 129098 GTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTA-CTTGAAAGTCACCCGCCAAAACG 129156 | | ||||| || | | | ||| ||||| | | | || || ||||| |||| ||| Sbjct 22550 GCTCGATCAGCTCCTTCATGAGGTACTTGTTCACGATCGTG-AACTCACCAGCCAGCACG 22492 Query 129157 CGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGA 129216 || || ||| ||||| ||| ||||||| | || ||||||||||| || || ||| Sbjct 22491 CGGCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGA 22432 Query 129217 GCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTTCGCAAACCGTGCT 129271 ||||| | ||| |||||||| ||||||| |||||||| || | ||||||| Sbjct 22431 GCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCT 22377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419704960080760