Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02]
4,504 sequences; 41,348,230 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq118 84.2 2e-11
>seq118
Length=44280
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || ||||| || || || |||||||| ||||| || | | ||||||| | ||
Sbjct 11700 TGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGC 11759
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||||||||| | |||| ||||| ||||| || || ||||||||||| ||||||
Sbjct 11760 TTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTC 11819
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| || | || || | || || ||||| ||||| || || || || |||
Sbjct 11820 TGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTC 11879
Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179
| ||| || ||||| || ||||| ||
Sbjct 11880 AAAGTCTTCACAAAGATCTGCATCTT 11905
Score = 82.4 bits (90), Expect = 5e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || ||||| || || || |||||||| ||||| || | | ||||||| | ||
Sbjct 11472 TGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGC 11531
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||||||||| | |||| ||||| ||||| || || ||||||||||| ||||||
Sbjct 11532 TTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTC 11591
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| || | || || | || || ||||| ||||| || || || || |||
Sbjct 11592 TGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTC 11651
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
| ||| || ||||| || |||||
Sbjct 11652 AAAGTCTTCACAAAGATCTGCAT 11674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357372381859640
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |