Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq500 161 1e-34 seq118 154 2e-32 seq23 154 2e-32 seq301 107 2e-18 >seq500 Length=16590 Score = 161 bits (178), Expect = 1e-34 Identities = 152/191 (80%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||| || || || ||||| |||| |||||||||||||||||||| | Sbjct 12835 CCTTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12894 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | ||| | || ||||||||| ||| |||| ||||| | | | Sbjct 12895 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 12953 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || ||||| |||| ||||||||| ||||||||||| || || ||| Sbjct 12954 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 13013 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 13014 AAGATCTGCAT 13024 >seq118 Length=44280 Score = 154 bits (170), Expect = 2e-32 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| |||| ||| |||||| ||||| ||||||||| Sbjct 11674 TGCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 11733 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| |||| |||||||||||| | || Sbjct 11734 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 11793 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| || |||| ||| | ||| | | | || ||| || ||| Sbjct 11794 GGATGCCTTCCTTGTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 11852 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||| ||||| || |||||||||| || || |||||||| ||||| ||| Sbjct 11853 ACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATCTTG 11906 Score = 152 bits (168), Expect = 6e-32 Identities = 177/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| || || || | | ||||| |||||| |||| ||| |||||| ||||| |||| Sbjct 11440 ATTAGTTACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGT 11499 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 ||||| || ||||| |||| || ||||||||||| ||||| |||| ||||||||||| Sbjct 11500 AGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGT 11559 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTC 46537 | | ||| | || ||||||||| || |||| ||| | ||| | | | || ||| | Sbjct 11560 CAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAC 11618 Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| |||| ||||| || |||||||||| || || |||||||| ||||| Sbjct 11619 GGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11674 >seq23 Length=76221 Score = 154 bits (170), Expect = 2e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| ||| |||||| ||||| ||||||||| || ||||| | Sbjct 19533 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 19592 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| |||| ||||||||||||| ||| | || |||||| Sbjct 19593 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 19652 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||| |||| ||| | ||| | | | | ||| | ||||| |||| ||||| Sbjct 19653 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATAGAGTCCGAAGGCTCCACGTCCAGCGTGA 19711 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||||| ||| || || ||||| ||||| Sbjct 19712 TGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19748 Score = 152 bits (168), Expect = 6e-32 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| |||| ||| |||||| ||||| ||||||||| Sbjct 19748 TGCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 19807 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||||||||| |||| ||||||||||||| || Sbjct 19808 TCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCG 19867 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| ||| |||| ||| | ||| | | | | ||| | ||| Sbjct 19868 GGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCC 19926 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || |||| |||||| || |||||||||| ||| || || ||||| ||||| || Sbjct 19927 ACGTCCAGCGTGATAGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 19979 >seq301 Length=77596 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||||| || || |||||||| || |||||||| | Sbjct 34934 ACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCC 34993 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||||||||||||||| |||| ||||||||||| Sbjct 34994 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 35035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565206577078080