Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq268 178 2e-39 seq2977 122 1e-22 seq171 86.0 7e-12 seq4045 82.4 9e-11 seq1893 82.4 9e-11 >seq268 Length=47326 Score = 178 bits (196), Expect = 2e-39 Identities = 737/1144 (64%), Gaps = 43/1144 (4%) Strand=Plus/Minus Query 106271 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 106330 |||||| ||||||||||||| || || || | ||||| || | ||| ||||| || ||| Sbjct 22143 ATAAATGCATCCGCGAGACCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGAC 22084 Query 106331 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 106390 || ||||| ||| ||||| || | || ||||||||| ||| | || ||| Sbjct 22083 TTGCGCGCCTCCTCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTC 22024 Query 106391 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 106450 || | ||| || | || | || || | || | || | || | || | ||| Sbjct 22023 ACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACA 21970 Query 106451 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 106510 |||| || ||||| | || |||| ||||| || ||| |||||| |||||| Sbjct 21969 AACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTAC 21910 Query 106511 TCTAAAATTTCTGTACACAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTA 106567 || | ||| || ||||||||| ||| ||||| || | |||| ||||| Sbjct 21909 TCCATAATCTCGCAGCACAAGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTC 21853 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||| |||| ||| |||||||| |||||| | ||| |||||||| |||| | Sbjct 21852 GACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCG 21793 Query 106628 TTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGG-CGT--TG---GCCCGTCCC 106681 | || || || ||||| || ||||| || || ||| || || || ||| Sbjct 21792 TCCAGGATGGCGAACCACA-----GCTGCTGGG-CATTGATCGTCTTGCGCGCGCGCCCC 21739 Query 106682 TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACC 106740 ||| ||||||||| ||| || | || ||||| || ||| | || ||| |||| || Sbjct 21738 TCCTTCTCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCC 21680 Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800 || |||| | || |||||||| ||| | || | | || || ||||||||||| Sbjct 21679 GGGGGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAA 21620 Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTT 106859 || || || | |||||| | | ||||| || | | | | || | |||| || | Sbjct 21619 CAGATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGT 21561 Query 106860 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 106919 |||| || | ||| |||||||| | | || |||||||| ||||| || |||| | Sbjct 21560 GGTTCTTGCGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGG 21501 Query 106920 CGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 106976 ||| || || || || | || | || | |||||||| || ||| | || || | Sbjct 21500 CGAACGAGCCTTTGCGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGA 21441 Query 106977 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTA 107035 | | ||||| || || || || | ||| || || || || || || || | || Sbjct 21440 CCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTC 21382 Query 107036 TTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCA 107095 |||| | | | || || || |||||||| || |||||||| ||||| ||| Sbjct 21381 GTGGCGCGGATGTTGTGCATACTGATGCCAATACCTCCGGCCCACTTGGAGATGCACGCG 21322 Query 107096 CACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAG 107155 |||| | | || || | || || || | || ||||| |||| |||| | ||||| Sbjct 21321 CACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAA 21262 Query 107156 CAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---A 107212 || |||| |||||| | || || || || || ||||| || || || ||||| | Sbjct 21261 CACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTA 21202 Query 107213 ATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 107272 | |||||| || ||||| || || || | || | | | ||||||| | | Sbjct 21201 AAGAACAT---CTGTGACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTG 21145 Query 107273 TGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCG 107332 || || || | ||||| ||||| | ||| | ||||| |||| || | || | Sbjct 21144 TGAATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTTCCGTTC 21085 Query 107333 AGCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGT 107390 | || ||||| |||| | |||||| || |||| || ||||| | | ||| ||| Sbjct 21084 A--CGCGGAAGAGGTAGCCCCGCTCAAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGT 21027 Query 107391 CCCG 107394 |||| Sbjct 21026 CCCG 21023 >seq2977 Length=1496 Score = 122 bits (134), Expect = 1e-22 Identities = 350/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 1255 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1196 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 117103 |||| || || |||||| |||| | || || |||||| | | | || || | Sbjct 1195 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC--AGTGAGTACAGCAGGC 1138 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 | || | ||| |||| ||||||| | |||| | |||||||||| ||||| || | Sbjct 1137 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 1078 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | ||| | |||| | | ||||||| | || || || |||||| |||| Sbjct 1077 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1018 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 117278 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 1017 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 963 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 ||| ||| | ||||| || ||| || || || || ||||||| || || ||||| Sbjct 962 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 903 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||| || |||||||| | ||| | || | |||||| || || |||||||| || ||||| Sbjct 902 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 843 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATT 117457 ||| || ||||| | || ||||| | | |||| ||| || | |||| |||| | Sbjct 842 CACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACT 784 Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 783 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 735 >seq171 Length=34523 Score = 86.0 bits (94), Expect = 7e-12 Identities = 170/247 (69%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || || |||||||| || | || |||||||||||||| || ||| | || ||||| | Sbjct 24707 CCTGTTCCGATACCATCACTGCCGTTCACGAGAACCATCGGGATGATCGGGATGTACCAT 24766 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 || ||||| || || | || || |||||||| || || || | || ||| | ||| Sbjct 24767 TCGGGTTCGATAGACTGGCCGTCTTCATCCAAATACTTCAGCACATCGTTGTCCAGCGGA 24826 Query 168411 TCAAAGA----TCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCG-TCTGAG 168465 || ||| || | |||| || ||| || |||||||| || | | ||| | Sbjct 24827 TCGTAGATAAGTCGCGTGAGCTGCT---CCAAG-TTGGTGAAAATATAACGAGCGCTG-G 24881 Query 168466 AAGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAA 168525 || |||||| || ||||| ||||||||||| || ||||| || ||||||| | Sbjct 24882 CAGAATCCTTGCCGCCCATCAGACGCGTACCGAACTGACCGATAGGAGACAGAAGGTGGA 24941 Query 168526 TGTTGTT 168532 ||||||| Sbjct 24942 TGTTGTT 24948 >seq4045 Length=1418 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 |||||| ||||| |||| | |||| ||||||||||||||| | | || ||||||||||| Sbjct 786 TCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATCCC 845 Query 136226 GGTAGGAGCT 136235 |||||||||| Sbjct 846 GGTAGGAGCT 855 >seq1893 Length=3755 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 |||||| ||||| |||| | |||| ||||||||||||||| | | || ||||||||||| Sbjct 3097 TCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATCCC 3156 Query 136226 GGTAGGAGCT 136235 |||||||||| Sbjct 3157 GGTAGGAGCT 3166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589947584080960