Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq118 95.1 8e-15 seq500 93.3 3e-14 seq23 89.7 3e-13 >seq118 Length=44280 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 11712 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAA 11771 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || |||||||| ||| ||||| || ||| Sbjct 11772 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTG 11831 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | ||| || || || ||||| | |||||||||| Sbjct 11832 TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACA 11891 Query 34971 AAGATCTGCATATTCGT 34987 ||||||||||| || || Sbjct 11892 AAGATCTGCATCTTGGT 11908 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 11484 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAA 11543 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || |||||||| ||| ||||| || ||| Sbjct 11544 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTG 11603 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | ||| || || || ||||| | |||||||||| Sbjct 11604 TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACA 11663 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 11664 AAGATCTGCAT 11674 >seq500 Length=16590 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 11/198 (6%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| || ||||| || | || | || || ||||| || ||||| || || Sbjct 12837 TTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 12896 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG----- 34908 || || |||||||| |||| | || |||||||| || ||||| ||||| Sbjct 12897 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 12956 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| |||| || || || | || ||||| || ||||| || ||||||| Sbjct 12957 ATGCTGTCGGA----CGGC-TCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCA 13011 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 13012 CAAAGATCTGCATGATTC 13029 >seq23 Length=76221 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || | || | || ||| Sbjct 19540 ACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 19599 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| |||| | ||||||||||| Sbjct 19600 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 19659 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||||| || ||| | || || || | ||| || || | || ||||| || Sbjct 19660 ATTTTCTGCTTCACGTTGTCGATAGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTG 19719 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 19720 CCCGTCAACGTCTTCACGAAGATCTGCAT 19748 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || | || | || ||| Sbjct 19768 ACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 19827 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| |||| | ||||||||||| Sbjct 19828 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 19887 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||||| || ||| | || || || | ||| || || | || || || || Sbjct 19888 ATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATAGTCTTG 19947 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 ||||| | |||||||| ||||||||||| ||| Sbjct 19948 CCCGTCAACGTCTTCACGAAGATCTGCATGTTC 19980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324615780050112