Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2977 122 1e-22 seq114 89.7 6e-13 >seq2977 Length=1496 Score = 122 bits (134), Expect = 1e-22 Identities = 350/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || | ||||||||||| ||||| | || |||| |||| Sbjct 735 GCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGAC 794 Query 65056 AC-AAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || ||| |||| | | ||||| || | ||||| || |||||||| || || Sbjct 795 CCTCGTGTTTCG-TCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTT 853 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| || |||||||| || || Sbjct 854 CTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCT 913 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 ||||||| || || || || ||| || ||||| | ||| ||| || | |||| Sbjct 914 GAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCG-CGTGCC 972 Query 65235 GC-TCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTG 65289 | | | | || ||| || | || || ||| | | ||||| |||||| Sbjct 973 TCATGTACTCGAAGTTG-GTGA---ACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTG 1028 Query 65290 AAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATC 65349 || || || | ||||||| | | |||| | ||| | ||||| | || ||| Sbjct 1029 CGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATC 1088 Query 65350 GGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAA 65409 || |||||||||| | |||| | ||||||| |||| ||| | || || || || | Sbjct 1089 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTAC 1148 Query 65410 CAAGTTGGGGTGCCACC--CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467 | | |||||| || || | |||| |||||| || || |||| ||||| | | Sbjct 1149 TCACT--GGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 1206 Query 65468 TTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | || | || |||||||||||||| |||||||| || || || || Sbjct 1207 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1255 >seq114 Length=159266 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 13605 AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCT 13664 |||| | || ||| | || ||||||||||| || || | || || || || ||||| Sbjct 72443 AGTGCTCGCTGATTTTGACTGAGGGTGATTCTGCCAAGGCACTGGCCGTGGCTGGTCTGG 72502 Query 13665 CTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTC 13724 | || ||||| |||||||| ||||||||||| || |||||||| ||| | ||| || | Sbjct 72503 CAGTGGTTGGACGTGATCAGTACGGTGTGTTTCCTCTTCGCGGCAAACTTCTGAACGTGC 72562 Query 13725 GGGACGCTTCGGTGGCACAGCT 13746 | || || | ||||| ||||| Sbjct 72563 GTGATGCGACTGTGGCGCAGCT 72584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596536013131520