Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq500 123 2e-23 seq23 120 2e-22 seq118 116 2e-21 seq301 107 1e-18 >seq500 Length=16590 Score = 123 bits (136), Expect = 2e-23 Identities = 147/197 (75%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| || ||||| || |||| | || || || ||||| |||||||||| Sbjct 12835 CCTTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12894 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | || |||||||| | ||||| || ||||| || Sbjct 12895 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 12951 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| |||||||| Sbjct 12952 -TGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTC 13010 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 13011 ACAAAGATCTGCATGAT 13027 >seq23 Length=76221 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 19536 CAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 19595 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 19596 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 19655 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | || || || | ||| || || | || ||||| Sbjct 19656 TTGGATTTTCTGCTTCACGTTGTCGATAGAGTCCGAAGGCTCCACGTCCAGCGTGATGGT 19715 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| || |||||||||||| Sbjct 19716 CTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19749 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 19764 CAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 19823 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 19824 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 19883 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | || || || | ||| || || | || || || Sbjct 19884 TTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATAGT 19943 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| || |||||||||||| Sbjct 19944 CTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19977 >seq118 Length=44280 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 11462 CAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 11521 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| ||||| || |||||||| |||| | || |||||||| Sbjct 11522 TTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 11581 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | ||||| || | ||| || || | ||| || || Sbjct 11582 CTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGT 11641 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| ||||||||||||||| Sbjct 11642 CTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 11675 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 11690 CAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 11749 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| ||||| || |||||||| |||| | || |||||||| Sbjct 11750 TTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 11809 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | ||||| || | ||| || || | ||| || || Sbjct 11810 CTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGT 11869 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| | ||||| |||||||||||||| Sbjct 11870 CTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11902 >seq301 Length=77596 Score = 107 bits (118), Expect = 1e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||||||||||||||||||| |||||||| || |||| | || Sbjct 34937 CAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTC 34996 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 34997 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 35035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325674921907976